Jatropha Genome Database

JcCA0315091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315091.30 + phase: 0 /partial
         (188 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14810.1 | Symbols:  | semialdehyde dehydrogenase family prot...   330   2e-91

>AT1G14810.1 | Symbols:  | semialdehyde dehydrogenase family protein
           | chr1:5102684-5104633 REVERSE
          Length = 375

 Score =  330 bits (847), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 167/188 (88%)

Query: 1   VQRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCNIFKQQYAFNLFSHNAPVLENG 60
           V+RMVVSTYQ         MEEL  QTREVLEGKPPTCNIF QQYAFNLFSHNAP+L+NG
Sbjct: 188 VKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLFSHNAPILDNG 247

Query: 61  YNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFEKPLDEDTARAILKNA 120
           YNEEEMKLVKETRKIWND  VKVTATCIRVPVMRAHAESVNLQFE PLDE+TAR ILK A
Sbjct: 248 YNEEEMKLVKETRKIWNDTEVKVTATCIRVPVMRAHAESVNLQFENPLDENTAREILKKA 307

Query: 121 AGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQEGNHGLDIFVCGDQIRKGAALNA 180
            GV +IDDRASN FPTPL+VSNKDDVAVGRIRRDVSQ+GN GLDIFVCGDQIRKGAALNA
Sbjct: 308 PGVYIIDDRASNTFPTPLDVSNKDDVAVGRIRRDVSQDGNFGLDIFVCGDQIRKGAALNA 367

Query: 181 IQIAELLL 188
           +QIAE+LL
Sbjct: 368 VQIAEMLL 375