Jatropha Genome Database

JcCA0314681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314681.10 - phase: 0 
         (187 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20120.1 | Symbols:  | unknown protein | chr5:6795889-6796921...   226   4e-60

>AT5G20120.1 | Symbols:  | unknown protein | chr5:6795889-6796921
           FORWARD
          Length = 188

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/177 (61%), Positives = 131/177 (74%)

Query: 11  YMRQRHSQGYASGGDDLEDDACXXXXXXXXXXXXXXXWVEIVENVLWIASAIFIVYFGDR 70
           Y+RQRHSQGYASGGDDLEDDAC               WVEI+ENVLWIASA+FIVYFGDR
Sbjct: 12  YIRQRHSQGYASGGDDLEDDACSRPQPFSLENPRSKTWVEILENVLWIASAVFIVYFGDR 71

Query: 71  HSNLIYLLWHDERIRRLPLYLGMVGAGVNLVIFLYTSMFTWGVRRFDEKWELSSISALPL 130
           HSN+I++L  D RI+R+PLY GM+G  VN++I +Y SM +W +RRFDEKWEL SISALP 
Sbjct: 72  HSNMIHILLRDARIKRMPLYFGMLGIAVNIIIIIYESMLSWSMRRFDEKWELWSISALPF 131

Query: 131 VTLLGLVSFCLLSFALWPVWSXXXXXXXXXXXMASMVICPHIMIVTFRQQNDTFRID 187
           +TLLG++SF LLSFALWP+W            MA +V+ PH+MI+ FR QND  RID
Sbjct: 132 ITLLGIISFGLLSFALWPIWGFLTLPLLFTLFMACLVVFPHLMIIKFRPQNDELRID 188