Jatropha Genome Database

JcCA0314481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314481.10 + phase: 0 
         (355 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33140.1 | Symbols:  | unknown protein | chr4:15981648-159841...   353   8e-98

>AT4G33140.1 | Symbols:  | unknown protein | chr4:15981648-15984135
           FORWARD
          Length = 353

 Score =  353 bits (907), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 174/265 (65%), Positives = 203/265 (76%), Gaps = 4/265 (1%)

Query: 89  LTVIGCSDSHKPPRAVAAPQNQLVREFENRLEDGSSSKTSARYINGHETCQGGKPLGFPD 148
            T+  C DSHK P   A    Q  R F + L  G S + +A      +   G        
Sbjct: 86  FTLRSCFDSHKKPDQKARALTQH-RRFLHDLGSGPSEERAA--AGTTDLADGRGAYLRTR 142

Query: 149 YPLTGKIVVAVDVDEVLGNFVSALNRFIADRYSSNHSVAEYHVYEFFKIWKCSHDEANIR 208
           +    KIVVAVD+DEVLGNFVSALNRFIADRY SNHSV+EYHVYEFFKIW CS +EA++R
Sbjct: 143 FQGNDKIVVAVDIDEVLGNFVSALNRFIADRYLSNHSVSEYHVYEFFKIWNCSRNEADLR 202

Query: 209 VHEFFKTSYFKSGIYPIPGAQKVLHKLSRLCNLSVVTSRQNVIKDHTIEWIEKHYPGVFH 268
           VHEFFKTSYFK GI+P+PGA K LHKLS+ C++SVVTSRQN IK+HT+EWIE H+PG+F 
Sbjct: 203 VHEFFKTSYFKKGIHPLPGAHKTLHKLSKYCDMSVVTSRQNAIKEHTLEWIEIHFPGLFK 262

Query: 269 EIHFGNHFALDGESRPKSEICRTLGATVLIDDNPRYAIECAEAGIKVLLFDYENSYPWCK 328
           +IHFGNHFAL GESRPKSEICR+ GA +LIDDNPRYA ECA  G+KVLLFDYENSYPW K
Sbjct: 263 QIHFGNHFALHGESRPKSEICRSFGAEILIDDNPRYAEECANIGMKVLLFDYENSYPWSK 322

Query: 329 TDLV-RHPLVTKVHNWEQVEQQLIS 352
           T+ V RHPLVT+VHNWE+VEQQ++S
Sbjct: 323 TESVDRHPLVTRVHNWEEVEQQILS 347