Jatropha Genome Database
- JcCA0314231.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0314231.10 + phase: 0 /pseudo/partial
(300 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS ... 444 e-125
AT1G65840.1 | Symbols: ATPAO4, PAO4 | ATPAO4 (ARABIDOPSIS THALIA... 89 3e-18
AT2G43020.1 | Symbols: ATPAO2 | ATPAO2 (Polyamine oxidase 2); am... 83 2e-16
AT3G59050.1 | Symbols: ATPAO3 | ATPAO3 (Polyamine oxidase 3); po... 79 2e-15
AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1 | LDL1 (LSD1-LIKE1); a... 61 1e-09
AT4G16310.1 | Symbols: LDL3 | LDL3 (LSD1-LIKE3); amine oxidase/ ... 61 1e-09
AT4G29720.1 | Symbols: ATPAO5 | ATPAO5 (Polyamine oxidase 5); am... 54 1e-07
AT3G10390.1 | Symbols: FLD | FLD (FLOWERING LOCUS D); amine oxid... 52 5e-07
>AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS
THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine
oxidase | chr5:4420222-4422974 REVERSE
Length = 472
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/279 (77%), Positives = 243/279 (87%), Gaps = 1/279 (0%)
Query: 23 KVLAENGIEDMVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSG 82
KVL ENG+ED++ILEA+DRIGGRI K+NFG V VELGAGWIAGVGGKESNPVWELA++
Sbjct: 20 KVLVENGVEDVLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESNPVWELASRFN 79
Query: 83 LRTCFSDYSNARYNIYDRSGKIFPSGVAADSYKKAVDSAIMKLRSQEANHACEVIE-PPC 141
LRTCFSDY+NAR+NIYDRSGKIFP+G+A+DSYKKAVDSAI+KL+S EA + +V E P
Sbjct: 80 LRTCFSDYTNARFNIYDRSGKIFPTGIASDSYKKAVDSAILKLKSLEAQCSGQVAEEAPS 139
Query: 142 SPKTPIELAIDFILHDFEMAEVEPISTYVDLGEREFLVADERGYECLLYKMAEDFLFTSE 201
SPKTPIELAIDFILHDFEMAEVEPISTYVD GEREFLVADERGYECLLYKMAE+FL TS
Sbjct: 140 SPKTPIELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYECLLYKMAEEFLVTSH 199
Query: 202 GKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVILSVSIGVLQSDLISFRPPLP 261
G ILD RLKLN+VVRE+ SRNGV+V+TEDG VYEA+YVI+S SIGVLQSDL+SF+P LP
Sbjct: 200 GNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLP 259
Query: 262 KWKTEAIGRCDVMVYTKIFLKFPYKFLAVXSXKGVLIYA 300
+WKTEAI +CDVMVYTKIFLKFP F + IYA
Sbjct: 260 RWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYA 298
>AT1G65840.1 | Symbols: ATPAO4, PAO4 | ATPAO4 (ARABIDOPSIS THALIANA
POLYAMINE OXIDASE 4); amine oxidase/ polyamine oxidase |
chr1:24490173-24492728 FORWARD
Length = 497
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 33 MVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSGLR-------- 84
+ +LE+ DRIGGRI + G V++GA W+ GV + NP+ + + GL
Sbjct: 54 VTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGV--SDENPLAPIIRRLGLTLYRTSGDD 111
Query: 85 TCFSDYSNARYNIYDRSGKIFPSGVA---ADSYKKAVDSAIMKLRSQEANHACEVIEPPC 141
+ D+ Y ++D G P + D++K+ ++ K+R + AN V++
Sbjct: 112 SILYDHDLESYGLFDMHGNKIPPQLVTKVGDAFKRILEET-EKIRDETAND-MSVLQ--- 166
Query: 142 SPKTPIELAIDFILHDFEMAEVEPISTYVDLGEREFLV-----------ADE-------- 182
I L + L MA E + Y+ E F V DE
Sbjct: 167 --GISIVLDRNPELRQEGMA-YEVLQWYLCRMEAWFAVDANLISLKCWDQDECLSGGHGL 223
Query: 183 --RGYECLLYKMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYV 240
+GYE ++ +A+D LD RL ++V + + S N VIV E G + A V
Sbjct: 224 MVQGYEPVIRTIAKD---------LDIRLN-HRVTKVVRTSNNKVIVAVEGGTNFVADAV 273
Query: 241 ILSVSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
I++V IGVL+++LI F P LP+WKT AI V KI L+F F
Sbjct: 274 IITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAF 320
>AT2G43020.1 | Symbols: ATPAO2 | ATPAO2 (Polyamine oxidase 2); amine
oxidase/ electron carrier/ oxidoreductase |
chr2:17891945-17894440 FORWARD
Length = 490
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 47/284 (16%)
Query: 33 MVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPV--------WELANQSGLR 84
+++LE+ DRIGGR+ + G V+LGA W+ GV + NP+ L SG
Sbjct: 53 VMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC--KENPLAPVIGRLGLPLYRTSGDN 110
Query: 85 TCFSDYSNARYNIYDRSGKIFPSGVAAD---SYKKAVDSAIMKLRS-QEANHACEVIEPP 140
+ D+ Y ++D G P + ++++ ++ I K+R Q+A+ +
Sbjct: 111 SVLYDHDLESYALFDMDGNQVPQELVTQIGVTFERILEE-INKVRDEQDADISISQAFSI 169
Query: 141 CSPKTPIELAIDFILHD-----------FEMAEVEPISTYVDLGEREFLVADE----RGY 185
+ P EL ++ + H+ + A+ E IS + E L RGY
Sbjct: 170 VFSRKP-ELRLEGLAHNVLQWYVCRMEGWFAADAETISAKC-WDQEELLPGGHGLMVRGY 227
Query: 186 ECLLYKMAEDFLFTSEGKILDNRL--KLNKVVREIHHSRNGVIVETEDGCVYEASYVILS 243
++ +A K LD R+ ++ K+VR NGV V TE+G + A +++
Sbjct: 228 RPVINTLA---------KGLDIRVGHRVTKIVRRY----NGVKVTTENGQTFVADAAVIA 274
Query: 244 VSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
V +GVL+S I F P LP+WK EAI V + KI L F F
Sbjct: 275 VPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVF 318
>AT3G59050.1 | Symbols: ATPAO3 | ATPAO3 (Polyamine oxidase 3);
polyamine oxidase | chr3:21824932-21827173 REVERSE
Length = 488
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 127/277 (45%), Gaps = 33/277 (11%)
Query: 33 MVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPV--------WELANQSGLR 84
+V+LE+ DRIGGR+ + G V+LGA W+ GV + NP+ L SG
Sbjct: 54 VVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC--KENPLAAVIGRLGLPLYRTSGDN 111
Query: 85 TCFSDYSNARYNIYDRSGKIFPSGVA---ADSYKKAVDSAIMKLRSQEANHACEVIEPPC 141
+ D+ Y ++D++G + ++++ ++ I K+R ++
Sbjct: 112 SVLYDHDLESYALFDKAGNQVSQELVTKVGENFEHILEE-ICKVRDEQDEDMSIAQAFSI 170
Query: 142 SPKTPIELAIDFILHD-----------FEMAEVEPISTYVDLGEREFLVADERGYECLLY 190
K EL ++ + H+ + A+ E IS ++E L+ G Y
Sbjct: 171 VFKRNPELRLEGLAHNVLQWYLCRMEGWFAADAETISA--KCWDQEELLPGGHGLMVRGY 228
Query: 191 KMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVILSVSIGVLQ 250
+ + L K LD ++L+ + +I +GV V TE G + A ++++ +GVL+
Sbjct: 229 RPVINTL----SKGLD--IRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLK 282
Query: 251 SDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
S +I+F P LP+WK EAI V + KI L F F
Sbjct: 283 SGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVF 319
>AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1 | LDL1 (LSD1-LIKE1);
amine oxidase/ electron carrier/ oxidoreductase |
chr1:23264638-23267172 REVERSE
Length = 844
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 41/280 (14%)
Query: 33 MVILEASDRIGGRIRKENF-GGVSVE----LGAGWIAGVGGKESNPVWELANQSGLRTCF 87
+++LE DR GGR++ GG VE +G + G+ G NP+ LA Q GL
Sbjct: 291 VLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSVLTGING---NPLGVLARQLGL---- 343
Query: 88 SDYSNARYNIYDRSGKIFPSGVAADSYKKAVDSAIMKLRSQEANHACEV----IEPPCSP 143
+ + D P+G AD+ +VDS I ++ + C++ IE S
Sbjct: 344 -----PLHKVRDICPLYLPNGELADA---SVDSKIEASFNKLLDRVCKLRQSMIEENKSV 395
Query: 144 KTPIELAIDFILHDFEMAEVEPISTYVD--LGEREFLVADERGYECLLY-------KMAE 194
P+ A++ + +AE + +D L E+ A G + Y +M
Sbjct: 396 DVPLGEALETFRLVYGVAEDQQERMLLDWHLANLEYANATLLGNLSMAYWDQDDPYEMGG 455
Query: 195 DFLFTSEG-KILDNRLKLN------KVVREIHHSRNGVIVETEDGCVYEASYVILSVSIG 247
D F G +I + L N V I + NGV+V T + + + +V +G
Sbjct: 456 DHCFIPGGNEIFVHALAENLPIFYGSTVESIRYGSNGVLVYTGNK-EFHCDMALCTVPLG 514
Query: 248 VLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
VL+ I F P LP K EAI R + K+ + FP F
Sbjct: 515 VLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNF 554
>AT4G16310.1 | Symbols: LDL3 | LDL3 (LSD1-LIKE3); amine oxidase/
electron carrier/ oxidoreductase | chr4:9218636-9224764
FORWARD
Length = 1628
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 184 GYECLLYKMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVILS 243
G + L K+ D + S+ +DN S++ V V T +GC Y V+++
Sbjct: 865 GLDIHLNKIVSDVSYVSDVSAMDN-------------SKHKVRVSTSNGCEYLGDAVLVT 911
Query: 244 VSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
V +G L+++ I F PPLP WK +I + V K+ L+FP F
Sbjct: 912 VPLGCLKAETIKFSPPLPDWKYASIKQLGFGVLNKVVLEFPTVF 955
>AT4G29720.1 | Symbols: ATPAO5 | ATPAO5 (Polyamine oxidase 5); amine
oxidase/ electron carrier/ oxidoreductase |
chr4:14553456-14555057 REVERSE
Length = 533
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 209 LKLNKVVREIHHSRNGVIVETEDGCVYEASYVILSVSIGVL----QSDLISFRPPLPKWK 264
++LN+ V +I N V + DG V A +VI++VS+GVL ++D F PPLP +K
Sbjct: 256 IQLNRKVTKIEWQSNEVKLHFSDGSVVFADHVIVTVSLGVLKAGIETDAELFSPPLPDFK 315
Query: 265 TEAIGRCDVMVYTKIFL-----KFP 284
++AI R V K+F+ KFP
Sbjct: 316 SDAIRRLGYGVVNKLFVEMSQRKFP 340
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 26 AENGIEDMVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSG 82
+ N ++ ++E RIGGRI F +E+GA WI G+GG +PV+ +A ++G
Sbjct: 26 SSNNTFELSVVEGGSRIGGRINTSEFSSEKIEMGATWIHGIGG---SPVYRIAKETG 79
>AT3G10390.1 | Symbols: FLD | FLD (FLOWERING LOCUS D); amine
oxidase/ electron carrier/ oxidoreductase |
chr3:3229293-3232345 FORWARD
Length = 884
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 213 KVVREIHHSRNGVIVETEDGCVYEASYVILSVSIGVLQSDLISFRPPLPKWKTEAIGRCD 272
K V+ I + NGV V T VYE V+ +V +GVL++ I F P LP+ K + I R
Sbjct: 397 KTVQTIRYGSNGVKV-TAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLG 455
Query: 273 VMVYTKIFLKFPYKF 287
+ K+ + FPY F
Sbjct: 456 FGLLNKVAMLFPYVF 470