Jatropha Genome Database

JcCA0314181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.10 - phase: 0 /partial
         (554 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04790.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    68   2e-11

>AT1G04790.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr1:1345469-1348143 FORWARD
          Length = 634

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 158/376 (42%), Gaps = 109/376 (28%)

Query: 1   MEEMDIEQVVDVPDTPDRIIAHAQLGRESNSSAAA-HSRTSDFRDKECLNKLGVSSRLVG 59
           ME  DI+ V+ +PDTPDR + H ++ R  +S  A    +  ++R+    + L   +R V 
Sbjct: 1   MENSDIDMVI-IPDTPDRSVHHREVKRRPHSPVAPLRYQREEYRN----HHLHGRARPVP 55

Query: 60  ESGHDRRLRLNRQGVPVNMDELKPRNKSIAFSPSENFYPSKNIPLFRRGAMVNDSKPETH 119
           E G +R     R          +PR              S    LFRR  +         
Sbjct: 56  EIGDNRESSDTR-----TESGHRPR-------------ASVGNALFRRTVV--------- 88

Query: 120 NIGMRSRDKGKAEHIKMPSKQPLYLEKDALFDM-----AFPRSASKSLQAQETRDVQISS 174
                 +DKGK+  I      P  +EK+ + ++         +AS+   +++ R+++ +S
Sbjct: 89  -----EKDKGKS--ISTDPCAP-RVEKNPVLNLNQRNGHVHVAASRYQPSEDIRELR-TS 139

Query: 175 NGESSL---HFSRMTSSNSLKGKEKIGVSSCNGSGSAINHGKEVDLNSVSQPKVEKQMSA 231
           NG S L   H S +   NS KGKEK        SGS + H + +DL+S            
Sbjct: 140 NGCSPLRGDHNSFVLPGNSNKGKEKAD------SGS-VPHRETIDLSS------------ 180

Query: 232 SHLAVTSPRVTGQKRLVRNGCISPHNIASRAQRLAERLRVGSADIGKYHS----SNMVSD 287
                  P+  G KRLVR+GCISPH IA+RA++        +AD   Y +      + S+
Sbjct: 181 -----GKPQNRGTKRLVRHGCISPHEIAARARQ--------AADTNSYDTLSVEQELASE 227

Query: 288 GPPTVDIKEVVAEENNCHRAKGKGLVLHSSKSKEHDAKVANVSTSSGPNNKAPNESRDAL 347
              ++ I+E+V E +   RA+GK   + SS+    D                        
Sbjct: 228 TASSIGIREIVPESDIHGRARGKRPEISSSRVASRDG----------------------- 264

Query: 348 LGGWRSTRNRGKKMYY 363
           L GW STRNR   M +
Sbjct: 265 LEGWVSTRNRNLNMEH 280