Jatropha Genome Database

JcCA0314071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314071.20 - phase: 1 /pseudo/partial
         (169 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62760.1 | Symbols:  | nuclear protein ZAP-related | chr5:252...   128   1e-30

>AT5G62760.1 | Symbols:  | nuclear protein ZAP-related |
           chr5:25204730-25209393 REVERSE
          Length = 661

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 96/143 (67%), Gaps = 3/143 (2%)

Query: 20  KDGKRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSERMKGNLNALSGLIQAYGKQGKS 79
           K   +W  E    T+ VKEL +SKWSN ++ED+ E S+ M+ N  +L    Q   ++GKS
Sbjct: 515 KSESKWDAESGSRTEEVKELSRSKWSN-VEEDETENSQSMRRNSKSLPKSSQERQRKGKS 573

Query: 80  VRWSDQVGNTGFSIGAAKKAQMLSLVIGPGAGYNLKSNPLPEDE--AITTAKAESRRQSA 137
           V W D+ G+ GFSIGAA+   M SL+IGPG+GYN+KSNPL  +E  A+  A  +++ +  
Sbjct: 574 VWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKSNPLSAEESRALADAIGKAKVRGI 633

Query: 138 FQERLRAEHESFKAVFDKRKRRI 160
           FQ++LRAE ESFKAVFDKR  RI
Sbjct: 634 FQDQLRAERESFKAVFDKRHVRI 656