Jatropha Genome Database

JcCA0313951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313951.20 + phase: 0 /pseudo
         (171 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19770.1 | Symbols: ATVPS9A, VPS9A | VPS9A; Rho guanyl-nucleo...   248   2e-66
AT5G09320.1 | Symbols: VPS9B | VPS9B | chr5:2889007-2892016 REVERSE   209   7e-55

>AT3G19770.1 | Symbols: ATVPS9A, VPS9A | VPS9A; Rho
           guanyl-nucleotide exchange factor | chr3:6866916-6869114
           FORWARD
          Length = 520

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 134/144 (93%)

Query: 1   MESADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAA 60
           ME+ DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A+VQ+F +KMEAA
Sbjct: 1   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 60

Query: 61  FRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIR 120
           FRAHPLW+GCS+EEL+SAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +KMSL+QQFI 
Sbjct: 61  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 120

Query: 121 PENLDIKPTFQNETSWLVSRKDIQ 144
           PENLDI+PTFQNE+SWL+++K++Q
Sbjct: 121 PENLDIQPTFQNESSWLLAQKELQ 144


>AT5G09320.1 | Symbols: VPS9B | VPS9B | chr5:2889007-2892016 REVERSE
          Length = 712

 Score =  209 bits (532), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 121/144 (84%), Gaps = 3/144 (2%)

Query: 1   MESADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAA 60
           ME+ DV  GLH+FL +   PSA DF+KSIKSFIVS  N APDPE+D   VQDF  KME+A
Sbjct: 1   MENTDVVSGLHNFLSK---PSAKDFIKSIKSFIVSILNTAPDPEKDCDAVQDFFYKMESA 57

Query: 61  FRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIR 120
           FRAHPLW+GCSD+EL++AG+GLEKYVMTKLF RVFAS  +DV  DE+L +K+SL+QQFI 
Sbjct: 58  FRAHPLWSGCSDDELDNAGDGLEKYVMTKLFPRVFASNTEDVISDEKLFQKISLVQQFIS 117

Query: 121 PENLDIKPTFQNETSWLVSRKDIQ 144
           PENLDI+PTFQN+TSWL+++K++Q
Sbjct: 118 PENLDIQPTFQNQTSWLLAQKELQ 141