Jatropha Genome Database

JcCA0313811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313811.10 - phase: 0 /partial
         (169 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21130.1 | Symbols: EMB2271 | EMB2271 (EMBRYO DEFECTIVE 2271)...   222   9e-59
AT4G05410.1 | Symbols:  | transducin family protein / WD-40 repe...   206   8e-54

>AT4G21130.1 | Symbols: EMB2271 | EMB2271 (EMBRYO DEFECTIVE 2271);
           nucleotide binding | chr4:11274308-11276286 FORWARD
          Length = 479

 Score =  222 bits (565), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 133/169 (78%), Gaps = 7/169 (4%)

Query: 1   VPEESRLIFRASASSLECCCFIDNDEFLSGSDDGNIEVWGMQKKKPVYIVRNAHALFTDN 60
           VPE +RLI+RAS S+ ECCCF+++DEFLSGSD+G+I +W + KKKPV+IV NAH +  D+
Sbjct: 318 VPESTRLIYRASESNFECCCFVNSDEFLSGSDNGSIALWSILKKKPVFIVNNAHHVIADH 377

Query: 61  TNLEQKENGSIFNGDKACSWVSSVTVCRGSDLAASGAGNGSVHLWAIESAPACIRPLYDV 120
            ++         N   ACSWVSSV VCRGS+LAASGAGNG V LW +ES  + I+PLY++
Sbjct: 378 DSVNH-------NCTPACSWVSSVAVCRGSELAASGAGNGCVRLWGVESGSSAIQPLYEL 430

Query: 121 PLVGFVNSLAFSKSGEFLVAGVGQEPRLGRWGQISAARNGVAIHRLKHS 169
           PL GFVNSLAF+KSG FL+AGVGQEPRLGRWG + +A+NGVAIH L+ S
Sbjct: 431 PLPGFVNSLAFAKSGRFLIAGVGQEPRLGRWGCLKSAQNGVAIHPLRLS 479


>AT4G05410.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:2743229-2745521 REVERSE
          Length = 504

 Score =  206 bits (523), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/171 (59%), Positives = 129/171 (75%), Gaps = 6/171 (3%)

Query: 1   VPEESRLIFRASASSLECCCFIDNDEFLSGSDDGNIEVWGMQKKKPVYIVRNAHALFTD- 59
           VPE +R+I+RA ASSLE CCFI ++E+LSGSD+G + +WGM KKKPV++ +NAH    D 
Sbjct: 334 VPESTRMIYRAPASSLESCCFISDNEYLSGSDNGTVALWGMLKKKPVFVFKNAHQDIPDG 393

Query: 60  ---NTNLEQKENGSIFNGDKACSWVSSVTVCRGSDLAASGAGNGSVHLWAIESAPACIRP 116
              N  LE  ++  + N   A SWV++V   RGSDLAASGAGNG V LWA+E+    IRP
Sbjct: 394 ITTNGILENGDHEPVNNNCSANSWVNAVATSRGSDLAASGAGNGFVRLWAVETN--AIRP 451

Query: 117 LYDVPLVGFVNSLAFSKSGEFLVAGVGQEPRLGRWGQISAARNGVAIHRLK 167
           LY++PL GFVNSLAF+KSG+FL+AGVGQE R GRWG + +A+NGVAIH L+
Sbjct: 452 LYELPLTGFVNSLAFAKSGKFLIAGVGQETRFGRWGCLKSAQNGVAIHPLR 502