Jatropha Genome Database

JcCA0313541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313541.20 - phase: 0 /pseudo
         (469 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16290.2 | Symbols:  | acetolactate synthase small subunit, p...   340   2e-93
AT5G16290.1 | Symbols:  | acetolactate synthase small subunit, p...   340   2e-93
AT2G31810.3 | Symbols:  | acetolactate synthase small subunit, p...   332   3e-91
AT2G31810.1 | Symbols:  | acetolactate synthase small subunit, p...   332   4e-91
AT2G31810.2 | Symbols:  | acetolactate synthase small subunit, p...   291   7e-79

>AT5G16290.2 | Symbols:  | acetolactate synthase small subunit,
           putative | chr5:5333874-5337387 FORWARD
          Length = 477

 Score =  340 bits (871), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/323 (58%), Positives = 223/323 (69%), Gaps = 28/323 (8%)

Query: 2   FQSPFEKW-FPGRSFASLQF-----FRSPRTSNVVVKVSGAAISKDNGNAVPVAEAPVPF 55
           FQ+  + + FP ++  SLQ       R  R + V+   S A+  K    A+  A++  P 
Sbjct: 17  FQNQNQGYGFPAKTPNSLQVNQIIDGRKMRNATVL---SAASTDK----AITTAQSVAPT 69

Query: 56  FALSKGQWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKV 115
            A  + + HTISVF+GDESGIINRIAGVFARRGYNIESLAVGLN+DKALFTIVV GTDKV
Sbjct: 70  -ACDRVRRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKV 128

Query: 116 LQQVIEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDIS 175
           LQQV+EQLNKLVNVIKVED+S+EP VERELML+KLN DPST  EIM LVDIFR K+VD S
Sbjct: 129 LQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTS 188

Query: 176 EHTLTIEVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYPDL 231
           E +LTIEVTGDPGKM A+  NL  F I+E+     IALRRE+M ETAPFWRFSAASYP L
Sbjct: 189 EQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHL 248

Query: 232 ERTQPGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLY 291
            +    +                            DVYPVEPY+D+    VLDAHWG++Y
Sbjct: 249 VKESSHETV--------AEKTKLALTGNGNASSGGDVYPVEPYNDF--KPVLDAHWGMVY 298

Query: 292 DEDSSGSQSHTLSMLVNDSPGVL 314
           DEDSSG +SHTLS+LV + PGVL
Sbjct: 299 DEDSSGLRSHTLSLLVANVPGVL 321



 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + +  G++N I G  +RRGYNI+SLAVG  + + L   T V+ GTD+ + +++ 
Sbjct: 308 HTLSLLVANVPGVLNLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVR 367

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KL+++ ++++I+  P  ERELML+K+  D S   +++ +  +FR K +D+S+HT+T+
Sbjct: 368 QLQKLIDLQEIQNITHMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITL 427

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELTIALRRERMRETA 218
           EVTGD  KM+A+   L  + I E+    R   +RE+ 
Sbjct: 428 EVTGDLRKMSALQTQLEAYGICEVARTGRVALVRESG 464


>AT5G16290.1 | Symbols:  | acetolactate synthase small subunit,
           putative | chr5:5333874-5337387 FORWARD
          Length = 477

 Score =  340 bits (871), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/323 (58%), Positives = 223/323 (69%), Gaps = 28/323 (8%)

Query: 2   FQSPFEKW-FPGRSFASLQF-----FRSPRTSNVVVKVSGAAISKDNGNAVPVAEAPVPF 55
           FQ+  + + FP ++  SLQ       R  R + V+   S A+  K    A+  A++  P 
Sbjct: 17  FQNQNQGYGFPAKTPNSLQVNQIIDGRKMRNATVL---SAASTDK----AITTAQSVAPT 69

Query: 56  FALSKGQWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKV 115
            A  + + HTISVF+GDESGIINRIAGVFARRGYNIESLAVGLN+DKALFTIVV GTDKV
Sbjct: 70  -ACDRVRRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKV 128

Query: 116 LQQVIEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDIS 175
           LQQV+EQLNKLVNVIKVED+S+EP VERELML+KLN DPST  EIM LVDIFR K+VD S
Sbjct: 129 LQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTS 188

Query: 176 EHTLTIEVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYPDL 231
           E +LTIEVTGDPGKM A+  NL  F I+E+     IALRRE+M ETAPFWRFSAASYP L
Sbjct: 189 EQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHL 248

Query: 232 ERTQPGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLY 291
            +    +                            DVYPVEPY+D+    VLDAHWG++Y
Sbjct: 249 VKESSHETV--------AEKTKLALTGNGNASSGGDVYPVEPYNDF--KPVLDAHWGMVY 298

Query: 292 DEDSSGSQSHTLSMLVNDSPGVL 314
           DEDSSG +SHTLS+LV + PGVL
Sbjct: 299 DEDSSGLRSHTLSLLVANVPGVL 321



 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + +  G++N I G  +RRGYNI+SLAVG  + + L   T V+ GTD+ + +++ 
Sbjct: 308 HTLSLLVANVPGVLNLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVR 367

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KL+++ ++++I+  P  ERELML+K+  D S   +++ +  +FR K +D+S+HT+T+
Sbjct: 368 QLQKLIDLQEIQNITHMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITL 427

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELTIALRRERMRETA 218
           EVTGD  KM+A+   L  + I E+    R   +RE+ 
Sbjct: 428 EVTGDLRKMSALQTQLEAYGICEVARTGRVALVRESG 464


>AT2G31810.3 | Symbols:  | acetolactate synthase small subunit,
           putative | chr2:13524271-13528246 FORWARD
          Length = 469

 Score =  332 bits (851), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 195/260 (75%), Gaps = 12/260 (4%)

Query: 59  SKGQWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKVLQQ 118
           SK + HTISVF+GDESG+INRIAGVFARRGYNIESLAVGLN+DKALFTIVV GT++VLQQ
Sbjct: 82  SKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNRDKALFTIVVCGTERVLQQ 141

Query: 119 VIEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHT 178
           VIEQL KLVNV+KVEDIS EPQVERELML+K+N  P +  EIM LVD FR +VVDI+EH 
Sbjct: 142 VIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPESRAEIMWLVDTFRARVVDIAEHA 201

Query: 179 LTIEVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYPDLERT 234
           LTIEVTGDPGKM AV RNL  F+I E+     IALRRE+M  TAPFWRFSAASYPDL+  
Sbjct: 202 LTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQ 261

Query: 235 QPGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLYDED 294
            P                              DVYPVEP+ D  ++++LDAHWG+L DED
Sbjct: 262 APVSVL--------RSSKKGAIVPQKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDED 313

Query: 295 SSGSQSHTLSMLVNDSPGVL 314
           +SG +SHTLS+LVND PGVL
Sbjct: 314 TSGLRSHTLSLLVNDIPGVL 333



 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 87/122 (71%), Gaps = 2/122 (1%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + D  G++N + GVFARRGYNI+SLAVG  + K +   T V+  TD+ + ++++
Sbjct: 320 HTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQ 379

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KLV+V +V D++  P  ERELML+K+ V+ +   +++ +  IFR K VD+S+HT+T+
Sbjct: 380 QLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITL 439

Query: 182 EV 183
           +V
Sbjct: 440 QV 441


>AT2G31810.1 | Symbols:  | acetolactate synthase small subunit,
           putative | chr2:13524271-13528246 FORWARD
          Length = 491

 Score =  332 bits (850), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 195/260 (75%), Gaps = 12/260 (4%)

Query: 59  SKGQWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKVLQQ 118
           SK + HTISVF+GDESG+INRIAGVFARRGYNIESLAVGLN+DKALFTIVV GT++VLQQ
Sbjct: 82  SKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNRDKALFTIVVCGTERVLQQ 141

Query: 119 VIEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHT 178
           VIEQL KLVNV+KVEDIS EPQVERELML+K+N  P +  EIM LVD FR +VVDI+EH 
Sbjct: 142 VIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPESRAEIMWLVDTFRARVVDIAEHA 201

Query: 179 LTIEVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYPDLERT 234
           LTIEVTGDPGKM AV RNL  F+I E+     IALRRE+M  TAPFWRFSAASYPDL+  
Sbjct: 202 LTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQ 261

Query: 235 QPGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLYDED 294
            P                              DVYPVEP+ D  ++++LDAHWG+L DED
Sbjct: 262 APVSVL--------RSSKKGAIVPQKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDED 313

Query: 295 SSGSQSHTLSMLVNDSPGVL 314
           +SG +SHTLS+LVND PGVL
Sbjct: 314 TSGLRSHTLSLLVNDIPGVL 333



 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 105/155 (67%), Gaps = 6/155 (3%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + D  G++N + GVFARRGYNI+SLAVG  + K +   T V+  TD+ + ++++
Sbjct: 320 HTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQ 379

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KLV+V +V D++  P  ERELML+K+ V+ +   +++ +  IFR K VD+S+HT+T+
Sbjct: 380 QLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITL 439

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELT----IALRRE 212
           ++TGD  KM A+ R L  + I E+     +AL RE
Sbjct: 440 QLTGDLDKMVALQRLLEPYGICEVARTGRVALARE 474


>AT2G31810.2 | Symbols:  | acetolactate synthase small subunit,
           putative | chr2:13524419-13528246 FORWARD
          Length = 421

 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 151/236 (63%), Positives = 173/236 (73%), Gaps = 12/236 (5%)

Query: 83  VFARRGYNIESLAVGLNKDKALFTIVVRGTDKVLQQVIEQLNKLVNVIKVEDISREPQVE 142
           VFARRGYNIESLAVGLN+DKALFTIVV GT++VLQQVIEQL KLVNV+KVEDIS EPQVE
Sbjct: 35  VFARRGYNIESLAVGLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVE 94

Query: 143 RELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTIEVTGDPGKMAAVLRNLSNFRI 202
           RELML+K+N  P +  EIM LVD FR +VVDI+EH LTIEVTGDPGKM AV RNL  F+I
Sbjct: 95  RELMLVKVNAHPESRAEIMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQI 154

Query: 203 EELT----IALRRERMRETAPFWRFSAASYPDLERTQPGDAFXXXXXXXXXXXXXXXXXX 258
            E+     IALRRE+M  TAPFWRFSAASYPDL+   P                      
Sbjct: 155 REIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVSVL--------RSSKKGAIVP 206

Query: 259 XXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLYDEDSSGSQSHTLSMLVNDSPGVL 314
                   DVYPVEP+ D  ++++LDAHWG+L DED+SG +SHTLS+LVND PGVL
Sbjct: 207 QKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVL 262



 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 105/156 (67%), Gaps = 7/156 (4%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIES-LAVGLNKDKAL--FTIVVRGTDKVLQQVI 120
           HT+S+ + D  G++N + GVFARRGYNI++ LAVG  + K +   T V+  TD+ + +++
Sbjct: 249 HTLSLLVNDIPGVLNIVTGVFARRGYNIQAYLAVGHAETKGISRITTVIPATDESVSKLV 308

Query: 121 EQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLT 180
           +QL KLV+V +V D++  P  ERELML+K+ V+ +   +++ +  IFR K VD+S+HT+T
Sbjct: 309 QQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTIT 368

Query: 181 IEVTGDPGKMAAVLRNLSNFRIEELT----IALRRE 212
           +++TGD  KM A+ R L  + I E+     +AL RE
Sbjct: 369 LQLTGDLDKMVALQRLLEPYGICEVARTGRVALARE 404