Jatropha Genome Database
- JcCA0313461.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0313461.20 + phase: 0 /partial
(80 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G28710.1 | Symbols: | unknown protein | chr1:10086850-100880... 105 7e-24
AT1G28700.1 | Symbols: | unknown protein | chr1:10083773-100849... 104 1e-23
AT1G28695.1 | Symbols: | unknown protein | chr1:10081894-100830... 103 2e-23
AT1G28710.2 | Symbols: | unknown protein | chr1:10086850-100877... 94 2e-20
AT1G14590.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 65 1e-11
AT4G19970.1 | Symbols: | unknown protein | chr4:10818242-108253... 64 2e-11
AT4G15970.1 | Symbols: | unknown protein | chr4:9049390-9051370... 64 3e-11
AT5G44820.1 | Symbols: | unknown protein | chr5:18095795-180975... 62 6e-11
AT2G02061.1 | Symbols: | unknown protein | chr2:498025-499559 F... 61 2e-10
AT5G40900.1 | Symbols: | unknown protein | chr5:16391847-163933... 53 4e-08
>AT1G28710.1 | Symbols: | unknown protein | chr1:10086850-10088025
REVERSE
Length = 340
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 2 QFSLDELEMALQKASMPN-KTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLL 60
++ +DELE L KA+M N KTVIIA++NKAYVE V+ TMLDLFLESFW GE TR LL
Sbjct: 48 EYPVDELEAVLDKAAMGNNKTVIIAMVNKAYVE-EVEGGRTMLDLFLESFWEGEGTRPLL 106
Query: 61 DHLLVVAVDQTAYDRCKFKR 80
DHL++VA DQT+YDRC F+R
Sbjct: 107 DHLMLVAADQTSYDRCLFRR 126
>AT1G28700.1 | Symbols: | unknown protein | chr1:10083773-10084958
REVERSE
Length = 338
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 62/81 (76%), Gaps = 2/81 (2%)
Query: 1 MQFSLDELEMALQKASMPN-KTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSL 59
+Q+ +DELE L KAS N KTVIIA++NKAYVE T MLDLFLESFW GE TR L
Sbjct: 48 IQYPVDELETVLDKASTGNNKTVIIAMVNKAYVEEDGGGRT-MLDLFLESFWEGEGTRPL 106
Query: 60 LDHLLVVAVDQTAYDRCKFKR 80
L+HL+VVA DQTAYDRC F+R
Sbjct: 107 LNHLMVVAADQTAYDRCLFRR 127
>AT1G28695.1 | Symbols: | unknown protein | chr1:10081894-10083054
REVERSE
Length = 329
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Query: 2 QFSLDELEMALQKASMPN-KTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLL 60
Q+ +DELE AL A+ N KTVII ++NKAYV+ V +TMLDLFLESFW GE T LL
Sbjct: 39 QYPVDELEAALYTAAAGNNKTVIITMVNKAYVK-EVGRGSTMLDLFLESFWEGEGTLPLL 97
Query: 61 DHLLVVAVDQTAYDRCKFKR 80
DHL+VVAVDQTAYDRC+FKR
Sbjct: 98 DHLMVVAVDQTAYDRCRFKR 117
>AT1G28710.2 | Symbols: | unknown protein |
chr1:10086850-10087766 REVERSE
Length = 278
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 19 NKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQTAYDRCKF 78
NKTVIIA++NKAYVE V+ TMLDLFLESFW GE TR LLDHL++VA DQT+YDRC F
Sbjct: 4 NKTVIIAMVNKAYVE-EVEGGRTMLDLFLESFWEGEGTRPLLDHLMLVAADQTSYDRCLF 62
Query: 79 KR 80
+R
Sbjct: 63 RR 64
>AT1G14590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid lumen; CONTAINS InterPro DOMAIN/s:
Nucleotide-diphospho-sugar transferase, predicted
(InterPro:IPR005069); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G02061.1); Has 179
Blast hits to 175 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
| chr1:4998957-5000617 REVERSE
Length = 386
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 7 ELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVV 66
+LE L KA+ ++TV++ LN A+ P +++DLF ESF GE+T +LDHL++V
Sbjct: 84 KLEDVLSKAATRDRTVVLTTLNAAWAAPG-----SVIDLFFESFRIGEETSQILDHLVIV 138
Query: 67 AVDQTAYDRC 76
A+D AY RC
Sbjct: 139 ALDAKAYSRC 148
>AT4G19970.1 | Symbols: | unknown protein | chr4:10818242-10825343
FORWARD
Length = 715
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 5/65 (7%)
Query: 12 LQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQT 71
L+ AS N+TVI+ LN+A+ EP+ ++ DLFLESF G+ T+ LL H++VV +D
Sbjct: 446 LENASTENRTVIVTTLNQAWAEPN-----SLFDLFLESFRIGQGTKKLLQHVVVVCLDSK 500
Query: 72 AYDRC 76
A+ RC
Sbjct: 501 AFARC 505
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 5 LDELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLL 64
+ ELE L A+M + TVII LN+A+ EP+ + D+F ESF G +T LL H++
Sbjct: 99 VSELERVLMNAAMEDNTVIITALNQAWAEPN-----STFDVFRESFKVGIETERLLKHVI 153
Query: 65 VVAVDQTAYDRC 76
V +D AYD+C
Sbjct: 154 AVCLDIKAYDQC 165
>AT4G15970.1 | Symbols: | unknown protein | chr4:9049390-9051370
FORWARD
Length = 358
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 2 QFSLDELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLD 61
Q L +L L +A+ +KTVII LNKA+ EP+ + DLFL SF G+ T+ LL
Sbjct: 27 QEDLKKLGKILTEAATEDKTVIITTLNKAWSEPN-----STFDLFLHSFHVGKGTKPLLR 81
Query: 62 HLLVVAVDQTAYDRC 76
HL+V +D+ AY RC
Sbjct: 82 HLVVACLDEEAYSRC 96
>AT5G44820.1 | Symbols: | unknown protein | chr5:18095795-18097558
REVERSE
Length = 367
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 5/65 (7%)
Query: 12 LQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQT 71
L+ AS N TVII LN+A+ EP+ ++ DLFLESF G+ T+ LL H++VV +D
Sbjct: 96 LENASTKNNTVIITTLNQAWAEPN-----SLFDLFLESFRIGQGTQQLLKHVVVVCLDIK 150
Query: 72 AYDRC 76
A++RC
Sbjct: 151 AFERC 155
>AT2G02061.1 | Symbols: | unknown protein | chr2:498025-499559
FORWARD
Length = 408
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 12 LQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQT 71
L++A+ + TVI+ LN+A+ P +++DLF ESF G+ TR LL HL+++A+D
Sbjct: 112 LRRAATKDGTVILTTLNEAWAAPG-----SVIDLFFESFRIGKGTRRLLKHLVIIALDAK 166
Query: 72 AYDRCK 77
AY RC+
Sbjct: 167 AYSRCQ 172
>AT5G40900.1 | Symbols: | unknown protein | chr5:16391847-16393375
FORWARD
Length = 322
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 8 LEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVA 67
L L++A+ +K VII ++++ + +P ++LDLFLES GE T+ LL+HL+VVA
Sbjct: 57 LSSLLKEAATEDKIVIITMVDREWAKPD-----SILDLFLESVRIGERTKHLLNHLIVVA 111
Query: 68 VDQTAYDRC 76
+D A C
Sbjct: 112 LDDQALRYC 120