Jatropha Genome Database

JcCA0313321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313321.10 + phase: 0 
         (433 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26610.1 | Symbols:  | zinc finger (C2H2 type) family protein...   182   4e-46
AT1G26590.1 | Symbols:  | zinc finger (C2H2 type) family protein...   114   2e-25

>AT1G26610.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr1:9193735-9195102 FORWARD
          Length = 455

 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 200/434 (46%), Gaps = 77/434 (17%)

Query: 6   KKKLFICKFCNKRYPCGKSLGGHIRIHLXXXXXXXXXXXXXXTDLEDESFVAANGSNSKR 65
           K++ F+CKFC+KR+PCGKSLGGHIR H+                + DE     NG  S  
Sbjct: 5   KERKFVCKFCSKRFPCGKSLGGHIRTHMNENSADSDEDEADKLKMIDE-----NGGQSS- 58

Query: 66  DSELYRLRENPRKTRRFM---------ADSSNSHFLQEKVCKACGKGFQSLKALCGHMAC 116
               Y LRENP+K +RF+                  + + C+ CGKGF S KALCGHMAC
Sbjct: 59  ----YGLRENPKKNKRFVDHRQIMALKQQQQQQQLQELRRCRECGKGFVSSKALCGHMAC 114

Query: 117 HSKNSFEDQSETTERLKDQVFDSQSDTETSAPSKXXXXXXXXYKT------------IGV 164
           HS           ER K  V DSQSDTE S+            K             I  
Sbjct: 115 HS-----------EREK-IVMDSQSDTEASSSPIRRRSKRVVVKPHHKAAFVVGGNGIMN 162

Query: 165 YXXXXXXXXXDLEQEQEEVAMCLMMLSKDSGFKGCFSSIADSSDNNSVVLETKSSSSPEL 224
                     ++E EQEE+A  LMMLS+DS FK   +S+A+SSDNNSV+LETKSSS  ++
Sbjct: 163 QSISASSDASEIEPEQEEMARSLMMLSRDSSFKKGHNSLAESSDNNSVILETKSSSGEQV 222

Query: 225 KIGIKKNGVNCVYNNGNAVLEMKKAKKQVMSTENDQSENSDSGYFRNGPKKVESEISVHG 284
           K+   KN       N   V    ++ ++      D S+NSDSGYFRNGPKK++S++SV G
Sbjct: 223 KMFNVKNVEELCKKNKLVVDNQMRSGEENGDVHYD-SDNSDSGYFRNGPKKLDSDVSVDG 281

Query: 285 FVGNDKFKKHKVEFRSRFEEEDIDPELGKRLSGFRRIKKELGKDLVXXXXXXXXXXNEFN 344
           F  N         F S   ++D D           R +KE  K+            +   
Sbjct: 282 FFRNKTIMGSGSGFNSSPTKQDRD---------MNRFRKEWYKEGGSGSGSGSGRSSTKY 332

Query: 345 NL----EFLSSNGSKIVKRPSVAVNRSSHKKSNGGCSDSIYESGENSINTDYVPS----- 395
           +L        S+G K +K                  ++S+Y+SGE+S+ TD         
Sbjct: 333 DLRKSKRGFPSHGRKKIKYE---------------FTESVYDSGEHSLETDSCADTNRTI 377

Query: 396 ELHNSCKRIKSCNG 409
           ++H+    +K  NG
Sbjct: 378 KIHSKSPMVKKANG 391


>AT1G26590.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr1:9189624-9190709 FORWARD
          Length = 361

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 136/292 (46%), Gaps = 72/292 (24%)

Query: 6   KKKLFICKFCNKRYPCGKSLGGHIRIHLXXXXXXXXXXXXXXTDLEDESFVAANGSNSKR 65
           K+  F+CK+C K +P GK+LGGHIRIH                   +E+ V  NG+  KR
Sbjct: 5   KENSFLCKYCYKTFPSGKALGGHIRIHT------------------NENSVGYNGNKKKR 46

Query: 66  DSELYRLRENPRKTRRFMADSSNSHFLQEKV-CKACGKGFQSLKALCGHMACHSKNSFED 124
             +           R+ MA     H  Q++V C+ CG+ F SLKAL GHMACH       
Sbjct: 47  LVD----------QRKMMA---QKHKQQQQVGCRECGRVFVSLKALRGHMACH------- 86

Query: 125 QSETTERLKDQVFDSQSDTE---TSAP-SKXXXXXXXXYKTIGVYXXXXXXXXXDLEQEQ 180
             E  + L D   +SQSDTE   +SAP  K                        +++QE+
Sbjct: 87  -GEVKKMLMDD--NSQSDTESETSSAPMRKRSKRVVMKQSNSESLSNGSSSFGSEIDQER 143

Query: 181 EEVAMCLMML-SKDSGFKG----CFSSIADSSDNNSVVLETKSSSSPELKIGIKKNGVNC 235
            + A  LMML S  S FK       +S+ +SSDNNS ++E KSSS  E KI   KN V+ 
Sbjct: 144 RDGAYNLMMLSSDSSSFKKRRNMVMNSLGESSDNNSAIVENKSSSGDEFKIMNVKNAVD- 202

Query: 236 VYNNGNAVLEMKKAKKQVMSTEND-----QSENSDSGYFRNGPKKVESEISV 282
                           Q  S ++D      S+ SDS YF NGP K ES+ISV
Sbjct: 203 ---------------DQWRSADDDGVSLCDSDGSDSDYFMNGPSKSESDISV 239