Jatropha Genome Database

JcCA0313071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313071.20 - phase: 2 /partial
         (227 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26330.1 | Symbols:  | DNA binding | chr1:9107625-9113520 FOR...   226   6e-60

>AT1G26330.1 | Symbols:  | DNA binding | chr1:9107625-9113520 FORWARD
          Length = 1189

 Score =  226 bits (577), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 153/225 (68%), Gaps = 10/225 (4%)

Query: 2    PTEEFTITSNDYISPCIMELKRIPECASLVIGHNGFGEFTLWDISRRIFVSRFSTPGTSV 61
            PTEE+ I +N  IS CIMELK+IP+C  LVIGHNG GEFT+WDIS+R  VSRF +P   +
Sbjct: 963  PTEEYVILANPCISSCIMELKKIPKCPHLVIGHNGIGEFTIWDISKRSLVSRFVSPSNLI 1022

Query: 62   CQFCPISWFSWQREVHASNYPNVAAHINRLIDATKVQFSEHSKNHSFPPLKGEDVAIWCL 121
             +F P S F+W   VH+  +  +  +++ ++ ATK+ FS+   N +  P + +D AIW L
Sbjct: 1023 FEFIPTSLFAWH-PVHS--HSTIEDNVDMILAATKLWFSKGVNNKTLVPAEVKDTAIWLL 1079

Query: 122  VSTALNTDAQ-HKYESSASQINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIG 180
            VST L++DA+  + ES      P+  WRLALLVK+ +ILGS LD R    GT +GHG+ G
Sbjct: 1080 VSTDLDSDAKCDRVES------PVRCWRLALLVKDQLILGSQLDPRADVAGTISGHGVAG 1133

Query: 181  TLDGLVYMWELLTGDKLGTLHKFKGGSVSCIAADDSGSGVVAVAD 225
            TLDGLVYMW+L TG KLG+LH FKG  VSCI+ DDS +  +A  D
Sbjct: 1134 TLDGLVYMWDLSTGTKLGSLHDFKGQRVSCISTDDSRNICIASED 1178