Jatropha Genome Database

JcCA0312871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.20 + phase: 0 
         (190 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03250.1 | Symbols:  | unknown protein | chr1:793576-795159 R...   273   6e-74

>AT1G03250.1 | Symbols:  | unknown protein | chr1:793576-795159
           REVERSE
          Length = 245

 Score =  273 bits (697), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 135/199 (67%), Positives = 159/199 (79%), Gaps = 18/199 (9%)

Query: 1   MATTEVLQLIEEGLVSSRLLDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWIND 60
           MA T V++  E     S L+DP + DT+ SRGLS+EKKIE LESL G+VSNRRSRRW+ND
Sbjct: 1   MAATNVMRRDE-----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 55

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVPLSPFCMTNVGEWEKFRNIDMDKQ-------- 112
           R+LMELVPRL+A+EIRGLFAPPPWGDDVP S F +TNVGEW+KFRNIDMDK+        
Sbjct: 56  RILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEANIMDSLN 115

Query: 113 -----RRGRVDADKVAVLNAWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGDEEV 167
                ++G VD DK+AVLNAWRRID RTR+ALRRSFL +LIEGYE+CI  FI+E G+ +V
Sbjct: 116 RSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEEGGEGDV 175

Query: 168 LALQVQDPFHRLLLHGVCE 186
           L L+VQDPFHRLLLHGVCE
Sbjct: 176 LELKVQDPFHRLLLHGVCE 194