Jatropha Genome Database
- JcCA0312871.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0312871.10 - phase: 0
(343 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64980.1 | Symbols: | unknown protein | chr5:25960947-259630... 98 9e-21
AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 80 2e-15
AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 75 8e-14
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 72 4e-13
AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 70 2e-12
AT4G02590.2 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12... 68 9e-12
AT4G02590.1 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12... 68 9e-12
AT4G02590.3 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12... 68 1e-11
>AT5G64980.1 | Symbols: | unknown protein | chr5:25960947-25963000
REVERSE
Length = 344
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 233 LKALHNLVPQSVEGSQTAM-VDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIFLEGYHH 291
+KAL L+P VEG + ++ ++D+VK L LQ+KELSRSRLGGE S P F+EGY H
Sbjct: 237 IKALGKLLPHKVEGDNHELTLNAMVDHVKLLHLQMKELSRSRLGGEPISHPMAFIEGYGH 296
Query: 292 YIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMA 333
YI HEQ + LEE LL + AA LESKGL++ P++
Sbjct: 297 YIHHEQTMAKSLEEVMEDLLTKDFDAAANLLESKGLYLTPLS 338
>AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:15079489-15081606 REVERSE
Length = 310
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIFLE-GYHH 291
+K+L LVP + + +M+D+IIDYVKFLQLQVK LS SRLGG + I + G H
Sbjct: 156 MKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASASSQISEDAGGSH 215
Query: 292 YIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTIS 339
+ E +L+E + +A ++L+ KGL +MP++LA TIS
Sbjct: 216 ENTSSSGEAKMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTIS 263
>AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:10319646-10322177 REVERSE
Length = 350
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIFLEGYHHY 292
+KAL LVP + + +M+D+IIDYVKFLQLQVK LS SRLGG I G H
Sbjct: 164 MKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISEAGGSHG 223
Query: 293 IVHEQF------------RTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTIS 339
E +L+E + +A ++L+ KGL +MP++LA IS
Sbjct: 224 NASSAMVGGSQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 282
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:704279-706457 REVERSE
Length = 302
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 235 ALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIFLEGYHHYI- 293
+L LVP + + AM+D+I+DYVKFL+LQVK LS SRLGG P + +
Sbjct: 172 SLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTEMPLSSSVE 231
Query: 294 -----VHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
V E++ + E +L+E N AA + L+SK L +MP++LA I
Sbjct: 232 DETQAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAI 281
>AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23483670-23484889 REVERSE
Length = 297
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 19/126 (15%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSI-------- 284
+K+L LVP + + + +M+D+II+YV+FLQLQVK LS SRLGG P +
Sbjct: 125 MKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAG 184
Query: 285 -----------FLEGYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMA 333
L G + E+ +L+E + +A ++L+ KGL +MP++
Sbjct: 185 GRLNALTAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPIS 244
Query: 334 LADTIS 339
LA IS
Sbjct: 245 LATAIS 250
>AT4G02590.2 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12);
DNA binding / transcription factor |
chr4:1137968-1140306 REVERSE
Length = 310
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDP-------SIFLE- 287
L LVP + + AM+D+I+DYVKFL+LQVK LS SRLGG P S +E
Sbjct: 175 LQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVED 234
Query: 288 -----GYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
G E++ + E +L+E N AA + L+SK L +MP++LA I
Sbjct: 235 ETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI 290
>AT4G02590.1 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12);
DNA binding / transcription factor |
chr4:1137968-1140306 REVERSE
Length = 310
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDP-------SIFLE- 287
L LVP + + AM+D+I+DYVKFL+LQVK LS SRLGG P S +E
Sbjct: 175 LQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVED 234
Query: 288 -----GYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
G E++ + E +L+E N AA + L+SK L +MP++LA I
Sbjct: 235 ETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI 290
>AT4G02590.3 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12);
DNA binding / transcription factor |
chr4:1137968-1140117 REVERSE
Length = 247
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIF-------LE- 287
L LVP + + AM+D+I+DYVKFL+LQVK LS SRLGG P + +E
Sbjct: 112 LQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVED 171
Query: 288 -----GYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
G E++ + E +L+E N AA + L+SK L +MP++LA I
Sbjct: 172 ETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI 227