Jatropha Genome Database

JcCA0312651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312651.10 + phase: 0 /partial
         (357 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51405.1 | Symbols:  | myosin-related | chr1:19057780-1905958...   207   6e-54

>AT1G51405.1 | Symbols:  | myosin-related | chr1:19057780-19059582
           FORWARD
          Length = 487

 Score =  207 bits (528), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 141/319 (44%), Positives = 185/319 (57%), Gaps = 42/319 (13%)

Query: 24  KCIEVRNC-GNFDKQAHLLQRRLEKF-AGESDEACVKEIQEMAEASLSIKXXXXXXXXXX 81
           K +E RN   NFDKQA +L+R LE+F    S+E CVK IQ+MAEAS S+           
Sbjct: 203 KDMEARNFKHNFDKQASVLRRELERFDEAVSEEVCVKGIQKMAEASFSV-----HSDQNA 257

Query: 82  XXXXXANMEILRKKMEGLSKEHLLERMEEECGPMLSTANTSGSSSVANCKRIELQEMSSS 141
                 N++ L  KME LSK  LLERME+E G  L   ++S    +  CK I+  E    
Sbjct: 258 LRNNNGNIDTLSSKMEALSKGVLLERMEKEYGSSLVAPSSSSVQDMY-CKGIKAHE---- 312

Query: 142 SMRPQSKERKLYEERACSGCCKAIVQRVVEQVRAETEQWSQMQEMLGQVRDEMEELQASR 201
                       E++ CS  CK +++++ ++VRAE EQWSQMQEML QVR EMEELQ+ R
Sbjct: 313 ------------EKKDCSRHCKVVMRKIADEVRAEAEQWSQMQEMLNQVRKEMEELQSCR 360

Query: 202 DFWEDRALDSDYQIQSLQSAVKEWRRKAVSSEAKANELQAQVMXXXXXXXXXXXXXXXXT 261
           DFW++RAL++D +IQ+L S+V+ WRRKA+SSEAK   LQA+V                  
Sbjct: 361 DFWQNRALEADSEIQNLHSSVEGWRRKALSSEAKLKNLQAEVCGLQEEIKRLR------- 413

Query: 262 IRTKNQKLNPH-TESPNEMEKRVLVCRLKENRQANCGDGSKQKEMFADGRKKSHSLNASK 320
              K  KL P   + P+E EKRVL+CRLKENR +N GD SK    +++GR    S   S 
Sbjct: 414 ---KEDKLEPEKNKLPSESEKRVLICRLKENRHSNNGDWSK----YSEGRTTKPS---SS 463

Query: 321 RSPFREIGNSSSPLSRQNS 339
           R P RE+ NSS    ++NS
Sbjct: 464 RPPLREVKNSSVIARQRNS 482