Jatropha Genome Database

JcCA0312601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312601.10 - phase: 0 /pseudo/partial
         (68 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14255.1 | Symbols:  | zinc ion binding | chr2:6036974-604089...    52   9e-08

>AT2G14255.1 | Symbols:  | zinc ion binding | chr2:6036974-6040892
           FORWARD
          Length = 536

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 34/48 (70%)

Query: 1   SNAQQKQNKRWFDKIGLGKIGDTGYAPILFSIVIALMFLFINSVLSGN 48
           S A + +   + DKI  GK+G+T YAP+LFS+++ LM LFI S++S +
Sbjct: 246 SKAMRTRKNSFVDKIFCGKLGETSYAPMLFSLIVILMVLFITSIVSAS 293