Jatropha Genome Database

JcCA0312531.10
Show Alignment: 
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312531.10 - phase: 0 
         (487 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31820.1 | Symbols: ENP, NPY1, MAB4 | ENP (ENHANCER OF PINOID...   543   e-155
AT2G14820.1 | Symbols: NPY2 | NPY2 (NAKED PINS IN YUC MUTANTS 2)...   436   e-122
AT5G67440.1 | Symbols: NPY3 | NPY3 (NAKED PINS IN YUC MUTANTS 3)...   433   e-121
AT4G37590.1 | Symbols: NPY5 | NPY5 (NAKED PINS IN YUC MUTANTS 5)...   412   e-115
AT2G23050.1 | Symbols: NPY4 | NPY4 (NAKED PINS IN YUC MUTANTS 4)...   389   e-108
AT5G67440.2 | Symbols: NPY3 | NPY3 (NAKED PINS IN YUC MUTANTS 3)...   371   e-103
AT1G67900.2 | Symbols:  | phototropic-responsive NPH3 family pro...   365   e-101
AT1G67900.1 | Symbols:  | phototropic-responsive NPH3 family pro...   365   e-101
AT3G26490.1 | Symbols:  | phototropic-responsive NPH3 family pro...   332   4e-91
AT5G47800.1 | Symbols:  | phototropic-responsive NPH3 family pro...   309   2e-84
AT5G03250.1 | Symbols:  | phototropic-responsive NPH3 family pro...   285   4e-77
AT1G30440.1 | Symbols:  | phototropic-responsive NPH3 family pro...   270   1e-72
AT3G44820.1 | Symbols:  | protein binding / signal transducer | ...   248   6e-66
AT5G48800.1 | Symbols:  | phototropic-responsive NPH3 family pro...   248   6e-66
AT5G13600.1 | Symbols:  | phototropic-responsive NPH3 family pro...   245   4e-65
AT5G67385.1 | Symbols:  | protein binding / signal transducer | ...   239   3e-63
AT3G08570.1 | Symbols:  | protein binding / signal transducer | ...   230   2e-60
AT1G03010.1 | Symbols:  | phototropic-responsive NPH3 family pro...   229   2e-60
AT5G10250.1 | Symbols: DOT3 | DOT3 (DEFECTIVELY ORGANIZED TRIBUT...   225   5e-59
AT2G47860.1 | Symbols:  | phototropic-responsive NPH3 family pro...   224   1e-58
AT2G30520.1 | Symbols: RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protei...   221   6e-58
AT3G08660.1 | Symbols:  | phototropic-responsive protein, putati...   219   4e-57
AT5G66560.1 | Symbols:  | phototropic-responsive NPH3 family pro...   219   4e-57
AT5G64330.1 | Symbols: NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC...   218   5e-57
AT5G64330.2 | Symbols: NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC...   218   5e-57
AT3G49970.1 | Symbols:  | phototropic-responsive protein, putati...   206   2e-53
AT2G30520.3 | Symbols: RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protei...   197   2e-50
AT2G30520.2 | Symbols: RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protei...   197   2e-50
AT3G50840.1 | Symbols:  | phototropic-responsive NPH3 family pro...   196   2e-50
AT5G48130.1 | Symbols:  | phototropic-responsive NPH3 family pro...   150   2e-36
AT3G19850.1 | Symbols:  | phototropic-responsive NPH3 family pro...   133   2e-31
AT2G47860.2 | Symbols:  | phototropic-responsive NPH3 family pro...   132   3e-31
AT1G52770.1 | Symbols:  | phototropic-responsive NPH3 family pro...   131   1e-30
AT1G50280.1 | Symbols:  | phototropic-responsive NPH3 family pro...   125   4e-29
AT3G15570.1 | Symbols:  | phototropic-responsive NPH3 family pro...   121   1e-27
AT5G17580.1 | Symbols:  | phototropic-responsive NPH3 family pro...   112   4e-25
AT3G22104.1 | Symbols:  | phototropic-responsive NPH3 protein-re...   108   9e-24
AT3G03510.1 | Symbols:  | phototropic-responsive NPH3 family pro...   100   3e-21
AT3G49900.1 | Symbols:  | BTB/POZ domain-containing protein | ch...    65   7e-11

>AT4G31820.1 | Symbols: ENP, NPY1, MAB4 | ENP (ENHANCER OF PINOID);
           protein binding / signal transducer |
           chr4:15390788-15393627 REVERSE
          Length = 571

 Score =  543 bits (1399), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/439 (61%), Positives = 346/439 (78%), Gaps = 24/439 (5%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMKLGSKPD F+++GK ++Y  S+L +DVTI++GEV F+LHKFPLLSKSNR+Q+LV +
Sbjct: 1   MKFMKLGSKPDTFESDGKFVKYAVSDLDSDVTIHVGEVTFHLHKFPLLSKSNRMQRLVFE 60

Query: 61  ASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGN 120
           ASEE +DEI +LD PGG+KAFEICAKFCYGM VTLNAYN+ A RCAAEYLEMTED DRGN
Sbjct: 61  ASEEKTDEITILDMPGGYKAFEICAKFCYGMTVTLNAYNITAVRCAAEYLEMTEDADRGN 120

Query: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITW 180
           LI+KIEVFLNS IFRSWKDSIIVLQTT+SLLPWSEDLK+VGRC+DS+++K  V+P  ITW
Sbjct: 121 LIYKIEVFLNSGIFRSWKDSIIVLQTTRSLLPWSEDLKLVGRCIDSVSAKILVNPETITW 180

Query: 181 SYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDG 240
           SYT+NRKLS  DKIVE   + RE+ + +PKDWWVED+CEL+ID++KRV+  VKS GRM+ 
Sbjct: 181 SYTFNRKLSGPDKIVEYHREKREE-NVIPKDWWVEDVCELEIDMFKRVISVVKSSGRMNN 239

Query: 241 TVIGEALKTYAVRWLPDAFDDLTSDGRSWRYKYLVETLVCLLPS-DKGLG-CSCGFLLKL 298
            VI EAL+ Y  RWLP++ + LTS+  S   K LVET+V LLP  ++ +   SC FLLKL
Sbjct: 240 GVIAEALRYYVARWLPESMESLTSEASS--NKDLVETVVFLLPKVNRAMSYSSCSFLLKL 297

Query: 299 LKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTH 358
           LKV+I VG D++ RE+L + +SLKLHEASVKDLLI         ++VELV  +V+ ++  
Sbjct: 298 LKVSILVGADETVREDLVENVSLKLHEASVKDLLI---------HEVELVHRIVDQFMAD 348

Query: 359 EKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIP 418
           EK      V ++D   +FVL  G+G +L+VG+++D YL   A +  LTL+SF++LS+ +P
Sbjct: 349 EK-----RVSEDDRYKEFVL--GNGILLSVGRLIDAYL---ALNSELTLSSFVELSELVP 398

Query: 419 ESARPNHDGLYKAIDTYLK 437
           ESARP HDGLYKAIDT++K
Sbjct: 399 ESARPIHDGLYKAIDTFMK 417


>AT2G14820.1 | Symbols: NPY2 | NPY2 (NAKED PINS IN YUC MUTANTS 2);
           protein binding / signal transducer |
           chr2:6358864-6361300 FORWARD
          Length = 634

 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/445 (50%), Positives = 307/445 (68%), Gaps = 16/445 (3%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMK+GSK D+F+ +G ++RYV +ELA+D+++++   +F LHKFPLLSK   LQKL+  
Sbjct: 1   MKFMKIGSKLDSFKTDGNNVRYVENELASDISVDVEGSRFCLHKFPLLSKCACLQKLLSS 60

Query: 61  ASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGN 120
             + N D+I++   PGG  AFE CAKFCYGM VTL+AYNVVA RCAAEYL M E V++GN
Sbjct: 61  TDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMHETVEKGN 120

Query: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITW 180
           LI+KI+VFL+SS+FRSWKDSIIVLQTTK  LP SEDLK+V  C+D+IA+K  VD +++ W
Sbjct: 121 LIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDVSHVEW 180

Query: 181 SYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDG 240
           SYTYN+K    +    D +K R+    VP DWWVED+CEL+ID YKRV++ +K+K  + G
Sbjct: 181 SYTYNKKKLAEENNGADSIKARD----VPHDWWVEDLCELEIDYYKRVIMNIKTKCILGG 236

Query: 241 TVIGEALKTYAVRWLPDAFDDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLK 300
            VIGEALK Y  R L      +   G   ++K ++ETLV LLP++K    SCGFLLKLLK
Sbjct: 237 EVIGEALKAYGYRRLSGFNKGVMEQGDLVKHKTIIETLVWLLPAEKN-SVSCGFLLKLLK 295

Query: 301 VAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTHEK 360
               V   +  +E+L +RI  +L EAS+ +LLI +     TLYDV+LVQ +V  ++  +K
Sbjct: 296 AVTMVNSGEVVKEQLVRRIGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDK 355

Query: 361 YSQDLSVEKNDETDDF---VLRRGHGYM-----LNVGKIVDGYLSEIARDPNLTLASFID 412
            S+   +E  D+ D F    +R+  G +     L V K++D YL+EIA+DPNL  + FID
Sbjct: 356 NSE---IEVQDDEDGFEVQEVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFID 412

Query: 413 LSQSIPESARPNHDGLYKAIDTYLK 437
           +++S+    RP HD LY+AID +LK
Sbjct: 413 VAESVTSIPRPAHDALYRAIDMFLK 437


>AT5G67440.1 | Symbols: NPY3 | NPY3 (NAKED PINS IN YUC MUTANTS 3);
           protein binding / signal transducer |
           chr5:26912947-26914906 REVERSE
          Length = 579

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/447 (51%), Positives = 307/447 (68%), Gaps = 32/447 (7%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMKLGSKPD+FQ++   +RYV++ELATDV + +G+VKF+LHKFPLLSKS RLQKL+  
Sbjct: 1   MKFMKLGSKPDSFQSDEDCVRYVATELATDVVVIVGDVKFHLHKFPLLSKSARLQKLIAT 60

Query: 61  AS---EENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVD 117
            +   + + DEI + D PGG  AFEICAKFCYGM VTLNAYNVVA RCAAEYLEM E ++
Sbjct: 61  TTTDEQSDDDEIRIPDIPGGPPAFEICAKFCYGMAVTLNAYNVVAVRCAAEYLEMYESIE 120

Query: 118 RGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPAN 177
            GNL++K+EVFLNSS+ RSWKDSIIVLQTT+S  PWSED+K+  RC++SIA K ++DPA 
Sbjct: 121 NGNLVYKMEVFLNSSVLRSWKDSIIVLQTTRSFYPWSEDVKLDVRCLESIALKAAMDPAR 180

Query: 178 ITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGR 237
           + WSYTYNR+     K++   M      +SVP+DWWVED+ EL IDL+KRV+  ++ KG 
Sbjct: 181 VDWSYTYNRR-----KLLPPEMNN----NSVPRDWWVEDLAELSIDLFKRVVSTIRRKGG 231

Query: 238 MDGTVIGEALKTYAVRWLPDAFDDLTSDGRS---WRYKYLVETLVCLLPSDKGLGCSCGF 294
           +   VIGEAL+ YA + +P        +         + L+ETLV +LPS+K    SCGF
Sbjct: 232 VLPEVIGEALEVYAAKRIPGFMIQNDDNDDEEDVMEQRSLLETLVSMLPSEKQ-SVSCGF 290

Query: 295 LLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNC 354
           L+KLLK ++S    +  R+EL +RI  KL EA+V DLLI A     T+YD+++V++L++ 
Sbjct: 291 LIKLLKSSVSFECGEEERKELSRRIGEKLEEANVGDLLIRAPEGGETVYDIDIVETLIDE 350

Query: 355 YVTHEKYSQDLSVEKNDE---TDDFVLRRGHGYMLNVGKIVDGYLSEIAR-DPNLTLASF 410
           +VT          EK DE   +DD           NV K++DGYL+EI+R + NL+   F
Sbjct: 351 FVTQ--------TEKRDELDCSDDI----NDSSKANVAKLIDGYLAEISRIETNLSTTKF 398

Query: 411 IDLSQSIPESARPNHDGLYKAIDTYLK 437
           I +++ +    R +HDG+Y+AID +LK
Sbjct: 399 ITIAEKVSTFPRQSHDGVYRAIDMFLK 425


>AT4G37590.1 | Symbols: NPY5 | NPY5 (NAKED PINS IN YUC MUTANTS 5);
           protein binding / signal transducer |
           chr4:17663080-17665299 REVERSE
          Length = 580

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/451 (49%), Positives = 310/451 (68%), Gaps = 51/451 (11%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMKLGSKPD+FQ+EG ++RYVSSELATDV + IG+VKFYLHKFPLLSKS RLQKL+  
Sbjct: 1   MKFMKLGSKPDSFQSEGDNVRYVSSELATDVIVIIGDVKFYLHKFPLLSKSARLQKLITT 60

Query: 61  ASEENSDE-----------INMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEY 109
           ++  +++E           I + + PGG  +FEICAKFCYGM VTLNAYNVVAARCAAE+
Sbjct: 61  STSSSNEENQIHHHHHEDEIEIAEIPGGPASFEICAKFCYGMTVTLNAYNVVAARCAAEF 120

Query: 110 LEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIAS 169
           LEM E V++GNL++KIEVFLNSSI +SWKDSIIVLQTT++L P+SE+LK+ GRC+DSIAS
Sbjct: 121 LEMYETVEKGNLVYKIEVFLNSSILQSWKDSIIVLQTTRALSPYSEELKLTGRCLDSIAS 180

Query: 170 KTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVM 229
           + S+D + + WSYTY++K     K +++G++   K  +VP+DWWVED+C+L IDLYKR +
Sbjct: 181 RASIDTSKVEWSYTYSKK-----KNLDNGLR---KPQAVPRDWWVEDLCDLHIDLYKRAL 232

Query: 230 IAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLTSDGRS--WRYKYLVETLVCLLPSDKG 287
             ++++G +   VIGEAL  YA++ +P  F   +S   +   +Y+ L ++++ L+P D+ 
Sbjct: 233 ATIEARGNVSADVIGEALHAYAIKRIP-GFSKSSSVQVTDFAKYRALADSIIELIP-DEK 290

Query: 288 LGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVEL 347
              S  FL KLL+ +I +G D+     L+ R+  +L EA++ D+L         LYDVEL
Sbjct: 291 RSVSSSFLTKLLRASIFLGCDEVA--GLKNRVGERLDEANLGDVL---------LYDVEL 339

Query: 348 VQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDP-NLT 406
           +QSLV  +           ++  D  +D V  +      +V K+VDGYL+E +RD  NL 
Sbjct: 340 MQSLVEVF-----------LKSRDPREDDVTAKA-----SVAKLVDGYLAEKSRDSDNLP 383

Query: 407 LASFIDLSQSIPESARPNHDGLYKAIDTYLK 437
           L  F+ L++ +    R +HDG+Y+AID +LK
Sbjct: 384 LQKFLSLAEMVSSFPRQSHDGVYRAIDMFLK 414


>AT2G23050.1 | Symbols: NPY4 | NPY4 (NAKED PINS IN YUC MUTANTS 4);
           protein binding / signal transducer |
           chr2:9810785-9812468 FORWARD
          Length = 481

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/442 (46%), Positives = 291/442 (65%), Gaps = 48/442 (10%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMKLG+KPD+F ++G ++RYV++EL T++ I IG VKFYLHKFPLLSKS  LQK +  
Sbjct: 1   MKFMKLGTKPDSFLSKGDNVRYVTNELETEIIIIIGNVKFYLHKFPLLSKSGFLQKHIAT 60

Query: 61  ASEENS-----DEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTED 115
           +  E       DEI++ + PGG  AFEIC KFCYG+ VTLNAYNVVA RCAAE+LEM E 
Sbjct: 61  SKNEEEKKNQIDEIDISEIPGGSVAFEICVKFCYGITVTLNAYNVVAVRCAAEFLEMNET 120

Query: 116 VDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDP 175
            ++ NL++KI+VFLNS+IFRSWKDSIIVLQTTK LL   +  ++V RC+ SIAS  S+D 
Sbjct: 121 FEKSNLVYKIDVFLNSTIFRSWKDSIIVLQTTKDLLS-DDSEELVKRCLGSIASTASIDT 179

Query: 176 ANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSK 235
           + + WSYTYNRK  +         K R+  D VPKDWWVED+CEL IDLYK+ + A+K++
Sbjct: 180 SKVKWSYTYNRKKKLE--------KVRKPEDGVPKDWWVEDLCELHIDLYKQAIKAIKNR 231

Query: 236 GRMDGTVIGEALKTYAVRWLPDAFDDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFL 295
           G++   VIGEAL  YA+R +       + +      + L+ T++ LLP +KG   S  FL
Sbjct: 232 GKVPSNVIGEALHAYAIRRIA----GFSKESMQLIDRSLINTIIELLPDEKG-NISSSFL 286

Query: 296 LKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCY 355
            KL + +I +G +++ +E+L+KR+S +L E +V D+L         +YD+++VQSLV  +
Sbjct: 287 TKLHRASIFLGCEETVKEKLKKRVSEQLEETTVNDIL---------MYDLDMVQSLVKEF 337

Query: 356 VTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQ 415
           +  +  +                       ++V K++DGYL+E +RDPNL L +F+ L++
Sbjct: 338 MNRDPKTHS--------------------KVSVAKLIDGYLAEKSRDPNLPLQNFLSLAE 377

Query: 416 SIPESARPNHDGLYKAIDTYLK 437
           ++    R +HD LY+AID +LK
Sbjct: 378 TLSSFPRHSHDVLYRAIDMFLK 399


>AT5G67440.2 | Symbols: NPY3 | NPY3 (NAKED PINS IN YUC MUTANTS 3);
           protein binding / signal transducer |
           chr5:26912947-26914646 REVERSE
          Length = 542

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/406 (49%), Positives = 270/406 (66%), Gaps = 32/406 (7%)

Query: 42  LHKFPLLSKSNRLQKLVLKAS---EENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAY 98
           L +FPLLSKS RLQKL+   +   + + DEI + D PGG  AFEICAKFCYGM VTLNAY
Sbjct: 5   LKQFPLLSKSARLQKLIATTTTDEQSDDDEIRIPDIPGGPPAFEICAKFCYGMAVTLNAY 64

Query: 99  NVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLK 158
           NVVA RCAAEYLEM E ++ GNL++K+EVFLNSS+ RSWKDSIIVLQTT+S  PWSED+K
Sbjct: 65  NVVAVRCAAEYLEMYESIENGNLVYKMEVFLNSSVLRSWKDSIIVLQTTRSFYPWSEDVK 124

Query: 159 IVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDIC 218
           +  RC++SIA K ++DPA + WSYTYNR+     K++   M      +SVP+DWWVED+ 
Sbjct: 125 LDVRCLESIALKAAMDPARVDWSYTYNRR-----KLLPPEMNN----NSVPRDWWVEDLA 175

Query: 219 ELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLTSDGRS---WRYKYLV 275
           EL IDL+KRV+  ++ KG +   VIGEAL+ YA + +P        +         + L+
Sbjct: 176 ELSIDLFKRVVSTIRRKGGVLPEVIGEALEVYAAKRIPGFMIQNDDNDDEEDVMEQRSLL 235

Query: 276 ETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPA 335
           ETLV +LPS+K    SCGFL+KLLK ++S    +  R+EL +RI  KL EA+V DLLI A
Sbjct: 236 ETLVSMLPSEKQ-SVSCGFLIKLLKSSVSFECGEEERKELSRRIGEKLEEANVGDLLIRA 294

Query: 336 RSPQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDE---TDDFVLRRGHGYMLNVGKIV 392
                T+YD+++V++L++ +VT          EK DE   +DD           NV K++
Sbjct: 295 PEGGETVYDIDIVETLIDEFVTQ--------TEKRDELDCSDDI----NDSSKANVAKLI 342

Query: 393 DGYLSEIAR-DPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLK 437
           DGYL+EI+R + NL+   FI +++ +    R +HDG+Y+AID +LK
Sbjct: 343 DGYLAEISRIETNLSTTKFITIAEKVSTFPRQSHDGVYRAIDMFLK 388


>AT1G67900.2 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr1:25467737-25469888 FORWARD
          Length = 631

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/471 (43%), Positives = 298/471 (63%), Gaps = 45/471 (9%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMKLGS+PD F    + +R VSSE+++D TI +   ++ LHKFPLLSK  RLQ++   
Sbjct: 1   MKFMKLGSRPDTFYT-SEDLRCVSSEVSSDFTIEVSGSRYLLHKFPLLSKCLRLQRMC-- 57

Query: 61  ASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGN 120
            SE     I + +FPGG +AFE+CAKFCYG+ +T++AYN+VAARCAAEYL+M+E+V++GN
Sbjct: 58  -SESPESIIQLPEFPGGVEAFELCAKFCYGITITISAYNIVAARCAAEYLQMSEEVEKGN 116

Query: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITW 180
           L++K+EVF NS I   W+DSI+ LQTTK+   WSEDL I  RC+++IASK    P+ ++ 
Sbjct: 117 LVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCIEAIASKVLSHPSKVSL 176

Query: 181 SYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDG 240
           S++++R+  VRD   +D    R    S  + WW EDI EL IDLY R MIA+KS G++  
Sbjct: 177 SHSHSRR--VRD---DDMSSNRAAASS--RGWWAEDIAELGIDLYWRTMIAIKSGGKVPA 229

Query: 241 TVIGEALKTYAVRWLP------------DAFDDLTSDGRSWRYKYLVETLVCLLPSDKGL 288
           ++IG+AL+ YA +WLP            +  D  +    S +++ L+E+++ LLP++KG 
Sbjct: 230 SLIGDALRVYASKWLPTLQRNRKVVKKKEDSDSDSDTDTSSKHRLLLESIISLLPAEKG- 288

Query: 289 GCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTT-LYDVEL 347
             SC FLLKLLK A  +    S + EL +R++L+L EA+V DLLIP  S ++  LYDV++
Sbjct: 289 AVSCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLLIPPMSYKSELLYDVDI 348

Query: 348 VQSLVNCYVTHEKYSQDLSVEKND-------------ETDDFVLRRGHGYM-------LN 387
           V +++  ++   + S   S  +               E  D   +             L 
Sbjct: 349 VATILEQFMVQGQTSPPTSPLRGKKGMMDRRRRSRSAENIDLEFQESRRSSSASHSSKLK 408

Query: 388 VGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           V K+VDGYL +IARD NL L+ F+ L++S+PE +R +HD LY+AID YLK 
Sbjct: 409 VAKLVDGYLQQIARDVNLPLSKFVTLAESVPEFSRLDHDDLYRAIDIYLKA 459


>AT1G67900.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr1:25467737-25469888 FORWARD
          Length = 631

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/471 (43%), Positives = 298/471 (63%), Gaps = 45/471 (9%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMKLGS+PD F    + +R VSSE+++D TI +   ++ LHKFPLLSK  RLQ++   
Sbjct: 1   MKFMKLGSRPDTFYT-SEDLRCVSSEVSSDFTIEVSGSRYLLHKFPLLSKCLRLQRMC-- 57

Query: 61  ASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGN 120
            SE     I + +FPGG +AFE+CAKFCYG+ +T++AYN+VAARCAAEYL+M+E+V++GN
Sbjct: 58  -SESPESIIQLPEFPGGVEAFELCAKFCYGITITISAYNIVAARCAAEYLQMSEEVEKGN 116

Query: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITW 180
           L++K+EVF NS I   W+DSI+ LQTTK+   WSEDL I  RC+++IASK    P+ ++ 
Sbjct: 117 LVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCIEAIASKVLSHPSKVSL 176

Query: 181 SYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDG 240
           S++++R+  VRD   +D    R    S  + WW EDI EL IDLY R MIA+KS G++  
Sbjct: 177 SHSHSRR--VRD---DDMSSNRAAASS--RGWWAEDIAELGIDLYWRTMIAIKSGGKVPA 229

Query: 241 TVIGEALKTYAVRWLP------------DAFDDLTSDGRSWRYKYLVETLVCLLPSDKGL 288
           ++IG+AL+ YA +WLP            +  D  +    S +++ L+E+++ LLP++KG 
Sbjct: 230 SLIGDALRVYASKWLPTLQRNRKVVKKKEDSDSDSDTDTSSKHRLLLESIISLLPAEKG- 288

Query: 289 GCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTT-LYDVEL 347
             SC FLLKLLK A  +    S + EL +R++L+L EA+V DLLIP  S ++  LYDV++
Sbjct: 289 AVSCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDLLIPPMSYKSELLYDVDI 348

Query: 348 VQSLVNCYVTHEKYSQDLSVEKND-------------ETDDFVLRRGHGYM-------LN 387
           V +++  ++   + S   S  +               E  D   +             L 
Sbjct: 349 VATILEQFMVQGQTSPPTSPLRGKKGMMDRRRRSRSAENIDLEFQESRRSSSASHSSKLK 408

Query: 388 VGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           V K+VDGYL +IARD NL L+ F+ L++S+PE +R +HD LY+AID YLK 
Sbjct: 409 VAKLVDGYLQQIARDVNLPLSKFVTLAESVPEFSRLDHDDLYRAIDIYLKA 459


>AT3G26490.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr3:9704142-9706161 FORWARD
          Length = 588

 Score =  332 bits (850), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 193/469 (41%), Positives = 286/469 (60%), Gaps = 43/469 (9%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFM+LG +PD F    +S+R VSS+L  D+ I +   K+ LHKFP+LSK  RL+ LV  
Sbjct: 1   MKFMELGFRPDTFYT-VESVRSVSSDLLNDLVIQVKSTKYLLHKFPMLSKCLRLKNLVSS 59

Query: 61  ASEENSDE---INMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVD 117
              E S E   I ++DFPG  +AFE+CAKFCYG+ +TL A+NVVA RCAAEYL MTE+V+
Sbjct: 60  QETETSQEQQVIQLVDFPGETEAFELCAKFCYGITITLCAHNVVAVRCAAEYLGMTEEVE 119

Query: 118 RG---NLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVD 174
            G   NL+ ++E+FL + +F+SW+DS + LQTTK L  WSEDL I  RC+++IA+  +V 
Sbjct: 120 LGETENLVQRLELFLTTCVFKSWRDSYVTLQTTKVLPLWSEDLGITNRCIEAIANGVTVS 179

Query: 175 PA-----NITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVM 229
           P       +      NR    RD+I+ +G     K +S+   WW ED+ EL +DLY+R M
Sbjct: 180 PGEDFSTQLETGLLRNRSRIRRDEILCNGGGG-SKAESL--RWWGEDLAELGLDLYRRTM 236

Query: 230 IAVKSKGR-MDGTVIGEALKTYAVRWLPDAFDDLTSDGRSWRYKYLVETLVCLLPSDKGL 288
           +A+KS  R +   +IG AL+ YA +WLP +  + ++D        ++E+++ LLP +K  
Sbjct: 237 VAIKSSHRKISPRLIGNALRIYASKWLP-SIQESSADS-----NLVLESVISLLPEEKS- 289

Query: 289 GCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVELV 348
              C FLL+LLK+A  + V  S + EL  +   +L +A+V +LLIP       LYDV++V
Sbjct: 290 SVPCSFLLQLLKMANVMNVSHSSKMELAIKAGNQLDKATVSELLIPLSDKSGMLYDVDVV 349

Query: 349 QSLVNCYVTH-----------EKYSQDLSVEKNDETDDFVLRRG--------HGYMLNVG 389
           + +V  +++H            ++ +  S E+N   ++    RG           +  V 
Sbjct: 350 KMMVKQFLSHISPEIRPTRTRTEHRRSRS-EENINLEEIQEVRGSLSTSSSPPPLLSKVA 408

Query: 390 KIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           K+VD YL EIARD NLT++ F++L+++IP+++R  HD LY AID YL+V
Sbjct: 409 KLVDSYLQEIARDVNLTVSKFVELAETIPDTSRICHDDLYNAIDVYLQV 457


>AT5G47800.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:19354171-19356126 FORWARD
          Length = 559

 Score =  309 bits (792), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/446 (37%), Positives = 265/446 (59%), Gaps = 28/446 (6%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           MKFMK+G+KPD F  +  S R + ++   D+ I I    ++LH+  L+ K   L++L   
Sbjct: 1   MKFMKIGTKPDTFYTQEAS-RILITDTPNDLVIRINNTTYHLHRSCLVPKCGLLRRLCTD 59

Query: 61  ASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGN 120
             E ++  I + D PGG  AFE+CAKFCY + + L+A+N+V A CA+++L M++ VD+GN
Sbjct: 60  LEESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHNLVNALCASKFLRMSDSVDKGN 119

Query: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITW 180
           L+ K+E F +S I + WKDSI+ LQ+T  L  W E+L IV +C+DSI  K     + ++W
Sbjct: 120 LLPKLEAFFHSCILQGWKDSIVTLQSTTKLPEWCENLGIVRKCIDSIVEKILTPTSEVSW 179

Query: 181 SYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDG 240
           S+TY R           G   R+   SVP+DWW EDI +LD+DL++ V+ A +S   +  
Sbjct: 180 SHTYTRP----------GYAKRQH-HSVPRDWWTEDISDLDLDLFRCVITAARSTFTLPP 228

Query: 241 TVIGEALKTYAVRWLP-------DAFDDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCG 293
            +IGEAL  Y  RWLP         F    ++    R++ LV T+V ++P+DKG   S G
Sbjct: 229 QLIGEALHVYTCRWLPYFKSNSHSGFSVKENEAALERHRRLVNTVVNMIPADKG-SVSEG 287

Query: 294 FLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPAR-SPQTTLYDVELVQSLV 352
           FLL+L+ +A  V    + + EL ++ SL+L EA+++DLL+P+  S     YD +LV +++
Sbjct: 288 FLLRLVSIASYVRASLTTKTELIRKSSLQLEEATLEDLLLPSHSSSHLHRYDTDLVATVL 347

Query: 353 NCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFID 412
             ++   +      +  N+      +R+       V K++D YL  +A+D ++ ++ F+ 
Sbjct: 348 ESFLMLWRRQSSAHLSSNNTQLLHSIRK-------VAKLIDSYLQAVAQDVHMPVSKFVS 400

Query: 413 LSQSIPESARPNHDGLYKAIDTYLKV 438
           LS+++P+ AR +HD LYKAI+ +LKV
Sbjct: 401 LSEAVPDIARQSHDRLYKAINIFLKV 426


>AT5G03250.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:774591-776855 FORWARD
          Length = 592

 Score =  285 bits (729), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 174/464 (37%), Positives = 264/464 (56%), Gaps = 38/464 (8%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           M FM+LGSK +AF  EG++    ++ L +DVTI +G++KF+LHKFPLLS+S  L++L+ +
Sbjct: 1   MAFMRLGSKSEAFHREGQTW-LCTTGLVSDVTIEVGDMKFHLHKFPLLSRSGLLERLIEE 59

Query: 61  ASEENSDE--INMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDR 118
           +S ++     +++ + PGG K FE+  KFCYG+ + L A+NVV+ RCAAEYLEMT++   
Sbjct: 60  SSTDDGSGCVLSLDEIPGGGKTFELVTKFCYGVKIELTAFNVVSLRCAAEYLEMTDNYGE 119

Query: 119 GNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANI 178
           GNL+   E FLN  +F +W DSI  LQT + ++ ++EDL I+ RCVDS+A K   DP+  
Sbjct: 120 GNLVGMTETFLN-EVFGNWTDSIKALQTCEEVIDYAEDLHIISRCVDSLAVKACADPSLF 178

Query: 179 TWSYTYNRKLSVRDKIVEDGMKFREKVDSVPK-------DWWVEDICELDIDLYKRVMIA 231
            W     +  +   +  ED       + +  K       DWW +D   L + L+KR++ A
Sbjct: 179 NWPVGGGKN-ATSGQNTEDESHLWNGISASGKMLQHTGEDWWFDDASFLSLPLFKRLITA 237

Query: 232 VKSKGRMDGTVIGEALKTYAVRWLP--------DAFDDLTSDGRSWRYKYLVETLVCLLP 283
           ++++G M    I  A+  Y  + +P        D     T +      K  +E +V LLP
Sbjct: 238 IEARG-MKLENIAMAVMYYTRKHVPLMNRQVNMDEQVIETPNPSEEDQKTCLEEIVGLLP 296

Query: 284 SDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLY 343
           S KG+  +  FLL+LL+ A+ +    S RE LE+RI  +L +A++ DLLIP      TLY
Sbjct: 297 SKKGVNPT-KFLLRLLQTAMVLHASQSSRENLERRIGNQLDQAALVDLLIPNMGYSETLY 355

Query: 344 DVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGH-----GYMLN----VGKIVDG 394
           DVE V  ++  +V+  + +  +           ++  GH       +L     V  +VDG
Sbjct: 356 DVECVLRMIEQFVSSTEQAGIVP-------SPCIIEEGHLVKDGADLLTPTTLVATLVDG 408

Query: 395 YLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           YL+E+A D NL LA F  ++ +IP+ ARP  DG+Y AID YLK 
Sbjct: 409 YLAEVAPDVNLKLAKFEAIAAAIPDYARPLDDGVYHAIDVYLKA 452


>AT1G30440.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr1:10759475-10762199 FORWARD
          Length = 665

 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 255/461 (55%), Gaps = 28/461 (6%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           M  MKLGSK DAFQ +G++  + ++ L +D+ + +GE+ F+LHKFPLLS+S  +++ + +
Sbjct: 1   MACMKLGSKSDAFQRQGQAW-FCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAE 59

Query: 61  ASEENSDE--INMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDR 118
           AS+E  D+  I + D PGG K FE+ AKFCYG+ + L A NVV  RCAAE+LEMTE+   
Sbjct: 60  ASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGE 119

Query: 119 GNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANI 178
           GNLI + E F N  + +SWKDSI  L +   +L ++++L I  +C++S+A + S DP   
Sbjct: 120 GNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLF 179

Query: 179 TWSYTYNRK--LSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKG 236
            W    +     S    ++ +G+    +      DWW ED   L   L+KR++  ++S+G
Sbjct: 180 GWPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRG 239

Query: 237 -RMDGTVIGEALKTYAVRWLPDAFDDLTSDGRSWRY---------------KYLVETLVC 280
            R D  +I  +L  Y  + LP           S R+               K L+E +  
Sbjct: 240 IRED--IIAGSLTYYTRKHLPGLKRRRGGPESSGRFSTPLGSGNVLSEEEQKNLLEEIQE 297

Query: 281 LLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARS-PQ 339
           LL   KGL     F + +L++A  +         LEKRI ++L +A+++DL++P+ S   
Sbjct: 298 LLRMQKGL-VPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTM 356

Query: 340 TTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVL---RRGHGYMLNVGKIVDGYL 396
            TLYDV+ VQ +++ ++  ++             DD  L    +    M  V K++DGYL
Sbjct: 357 ETLYDVDSVQRILDHFLGTDQIMPGGVGSPCSSVDDGNLIGSPQSITPMTAVAKLIDGYL 416

Query: 397 SEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLK 437
           +E+A D NL L  F  L+ SIPE AR   DGLY+AID YLK
Sbjct: 417 AEVAPDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLK 457


>AT3G44820.1 | Symbols:  | protein binding / signal transducer |
           chr3:16361864-16364411 REVERSE
          Length = 651

 Score =  248 bits (633), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 254/457 (55%), Gaps = 30/457 (6%)

Query: 8   SKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLV--LKASEEN 65
           +K   F  EG    +  + L++D+T+ + +VKF+LHKFPL+SK  +L ++    K++++ 
Sbjct: 5   AKVSEFHREGNDW-FCKTGLSSDITVVVDDVKFHLHKFPLVSKCGKLARMYEDSKSTDKQ 63

Query: 66  SDEINMLD-FPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFK 124
           S    +L+ FPGG   F I A+FCYG  V + + N+V+  CAAEYLEMT +    NLI +
Sbjct: 64  SLWTTVLEEFPGGADNFLIVARFCYGARVDITSKNLVSIHCAAEYLEMTNEYGEDNLISQ 123

Query: 125 IEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWS-YT 183
           +E FL+  + R+WKD I+ LQ++  +L  +E L+++ + ++++++    DP+   W    
Sbjct: 124 VETFLHKHVLRNWKDCILALQSSSPVLKSAEKLQMIPKLMNAVSTMVCTDPSLFGWPMMM 183

Query: 184 YNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVI 243
           Y    S    I+ +G+    ++ S   DWW EDI  L +DL+KR++  +++KG    ++ 
Sbjct: 184 YGTLQSPGGSILWNGINTGARMRSSGSDWWYEDISYLSVDLFKRLIKTMETKGIRAESLA 243

Query: 244 GEALKTYAVRWLP--DAFDDLTSDGRSWRYKY---------------------LVETLVC 280
           G A+  YA ++LP    +   TSD    R +                      L+ET++ 
Sbjct: 244 G-AMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLAKASSPSSMPPLDQIALLETILS 302

Query: 281 LLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQT 340
           LLP  +G    C FLL LL+VA  +GVD +  ++LEKRI ++L  A++ +LLI   S   
Sbjct: 303 LLPEKRGRSF-CKFLLGLLRVAFILGVDGNCVKKLEKRIGMQLELATLDNLLILNYSDSE 361

Query: 341 TLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIA 400
           TLY+V+ V+ +V  +V+    S     E +  + D V       +  V  +VD Y++E+A
Sbjct: 362 TLYNVDCVERIVRHFVSSLSSSSSQLPEFSPPSLDPVTSPSPAPLKKVANLVDSYMAEVA 421

Query: 401 RDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLK 437
            D NL       L+ ++PES+RP +DGLY+A D Y K
Sbjct: 422 SDVNLKPDKMRSLAAALPESSRPLYDGLYRAFDIYFK 458


>AT5G48800.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:19786881-19789003 FORWARD
          Length = 614

 Score =  248 bits (633), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 152/426 (35%), Positives = 243/426 (57%), Gaps = 36/426 (8%)

Query: 22  YVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAF 81
           ++  ++ +D+TI +    F LHKFPL+S+S R++++V +  + +  ++ +L+ PGG + F
Sbjct: 36  WIFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELLNLPGGAETF 95

Query: 82  EICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSI 141
           E+ AKFCYG+   + + NV    C ++YLEMTE+  + NL  + E +L S + ++ +  +
Sbjct: 96  ELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCV 155

Query: 142 IVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWS---YTYNRKLSVRDKIVEDG 198
            VL+ ++ LLP +++L I+GRC+D+IASK   +    ++S   Y+ + +L +  ++   G
Sbjct: 156 QVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQVKSSG 215

Query: 199 MKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDA 258
                       DWW+ED+  L IDLY+RVM A+K +G +    IG +L +YA R L   
Sbjct: 216 ---------DGGDWWIEDLSVLRIDLYQRVMNAMKCRG-VRPESIGASLVSYAERELTK- 264

Query: 259 FDDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKR 318
                   RS   + +VET+V LLP +  L     FL  LL+ A+ +    S R +LE+R
Sbjct: 265 --------RSEHEQTIVETIVTLLPVE-NLVVPISFLFGLLRRAVILDTSVSCRLDLERR 315

Query: 319 ISLKLHEASVKDLLIPA-RSPQTTLYDVELVQS-LVNCYVTHEKYSQDLSVEKNDETDDF 376
           +  +L  A++ DLLIP+ R    TL+D++ V   LVN       +SQ    +  DE   F
Sbjct: 316 LGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVN-------FSQQGGDDSEDEESVF 368

Query: 377 VLRRGHG----YMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAI 432
                H      M  V K+VD YL+EIA D NL L+ F+ +++++P  AR  HDGLY+AI
Sbjct: 369 ECDSPHSPSQTAMFKVAKLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTLHDGLYRAI 428

Query: 433 DTYLKV 438
           D YLK 
Sbjct: 429 DLYLKA 434


>AT5G13600.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:4380432-4382497 FORWARD
          Length = 591

 Score =  245 bits (626), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 252/457 (55%), Gaps = 33/457 (7%)

Query: 1   MKFMKLGSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLK 60
           M  +KLGSK + F   G +     + L  DV I + +  F+LHKFPLLS+S  L+ L  K
Sbjct: 1   MASLKLGSKSEVFHLSGHTW-LCKTGLKPDVMIQVVDESFHLHKFPLLSRSGYLETLFSK 59

Query: 61  ASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGN 120
           ASE  +    + D PGG + F + AKFCYG+ + +   N V+ RCAAEYL+M+E+    N
Sbjct: 60  ASE-TTCVAQLHDIPGGPETFLLVAKFCYGVRIEVTPENAVSLRCAAEYLQMSENYGDAN 118

Query: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTT--KSLLPWSEDLKIVGRCVDSIASKTSVDPANI 178
           LI+  E FLN  +F +W+DSI  L+ +    +LP +E+L IV RC+ S+A K   +  N 
Sbjct: 119 LIYLTESFLNDHVFVNWEDSIKALEKSCEPKVLPLAEELHIVSRCIGSLAMKACAED-NT 177

Query: 179 TWSYTYNRKLSVRDKIVEDGMKFRE-KVDSVPKDWWVEDICE-LDIDLYKRVMIAVKSKG 236
           ++   +N  +S+ +      + +   +  +  ++WW  D+   LD+ +YKR +  V+S+G
Sbjct: 178 SF---FNWPISLPEGTTTTTIYWNGIQTKATSENWWFNDVSSFLDLPMYKRFIKTVESRG 234

Query: 237 RMDGTVIGEALKTYAVRWLP---------DAFDDLTSDGRSWRYKY-----LVETLVCLL 282
            ++  +I  ++  YA R LP            ++ T+ G    Y +     L+E +V LL
Sbjct: 235 -VNAGIIAASVTHYAKRNLPLLGCSRKSGSPSEEGTNYGDDMYYSHEEQRSLLEEIVELL 293

Query: 283 PSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIP-ARSPQTT 341
           P  K +  S  FLL+LL+ ++ +      +E LEKRI ++L EA+++DLLIP  +    T
Sbjct: 294 PGKKCV-TSTKFLLRLLRTSMVLHASQVTQETLEKRIGMQLDEAALEDLLIPNMKYSGET 352

Query: 342 LYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIAR 401
           LYD + VQ +++ ++    +   +  EK    D   L+     +  V  ++DGYL+E+A 
Sbjct: 353 LYDTDSVQRILDHFML--TFDSSIVEEKQMMGDSHPLKS----ITKVASLIDGYLAEVAS 406

Query: 402 DPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           D NL L+ F  L   IPE  RP  DG+Y+AID Y+K 
Sbjct: 407 DENLKLSKFQALGALIPEDVRPMDDGIYRAIDIYIKA 443


>AT5G67385.1 | Symbols:  | protein binding / signal transducer |
           chr5:26884754-26887083 FORWARD
          Length = 604

 Score =  239 bits (610), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 237/425 (55%), Gaps = 32/425 (7%)

Query: 24  SSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEE-NSDEINMLDFPGGHKAFE 82
           S E+++DVT+++GE  F LHKFPL+SK   ++KLV ++S++ +S  I + D PGG +AFE
Sbjct: 22  SQEVSSDVTVHVGEASFSLHKFPLMSKCGFIKKLVSESSKDSDSTVIKIPDIPGGSEAFE 81

Query: 83  ICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSII 142
           + AKFCYG+   ++  N+   RCAAEYLEMTE+    NL+ + E +LN    +S   SI 
Sbjct: 82  LAAKFCYGINFDMSTENIAMLRCAAEYLEMTEEHSVENLVVRAEAYLNEVALKSLSSSIT 141

Query: 143 VLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFR 202
           VL  ++ LLP +E +K+V RC+D+IA  T  +     +    +      + +V+   K  
Sbjct: 142 VLHKSEKLLPIAERVKLVSRCIDAIAYMTCQESH---FCSPSSSNSGNNEVVVQQQSK-- 196

Query: 203 EKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDL 262
                   DWW ED+  L ID ++RV+IA+ ++G      +G  L  YA + L     ++
Sbjct: 197 ----QPVVDWWAEDLTVLRIDSFQRVLIAMMARG-FKQYGLGPVLMLYAQKSLRGL--EI 249

Query: 263 TSDG-------RSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREEL 315
              G       +    + ++ET+V LLP +K    S  FL  LL+ AI +    + R +L
Sbjct: 250 FGKGMKKIEPKQEHEKRVILETIVSLLPREKN-AMSVSFLSMLLRAAIFLETTVACRLDL 308

Query: 316 EKRISLKLHEASVKDLLIPARS--PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDET 373
           E R+ L+L +A + DLLIP+ S     +++D + VQ ++  Y+  E     LS    D  
Sbjct: 309 ENRMGLQLGQAVLDDLLIPSYSFTGDHSMFDTDTVQRILMNYLEFEVEGVRLSNNGVDLA 368

Query: 374 DDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAID 433
            D         M  VGK+++ Y++EIA D N++L  FI L++ IPE +R   DG+Y+A+D
Sbjct: 369 GD---------MERVGKLLENYMAEIASDRNVSLQKFIGLAELIPEQSRVTEDGMYRAVD 419

Query: 434 TYLKV 438
            YLK 
Sbjct: 420 IYLKA 424


>AT3G08570.1 | Symbols:  | protein binding / signal transducer |
           chr3:2602258-2604412 REVERSE
          Length = 617

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 225/424 (53%), Gaps = 27/424 (6%)

Query: 25  SELATDVTINIGEVKFYLHKFPLLSKSNRLQKLV--LKASEENSDEINMLDFPGGHKAFE 82
           S++A D+TI +    F LHKFPL+++  +++K+V  +K S  N     + DFPGG K FE
Sbjct: 32  SDVAGDITIVVDGESFLLHKFPLVARCGKIRKMVAEMKESSSNLSHTELRDFPGGSKTFE 91

Query: 83  ICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSII 142
           +  KFCYG+   +   NVVA RCAA YLEMTED    NLI + E +L    FRS + S+ 
Sbjct: 92  LAMKFCYGINFEITISNVVAIRCAAGYLEMTEDFKEENLIARTETYLEQVAFRSLEKSVE 151

Query: 143 VLQTTKSLLPW--SEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMK 200
           VL + ++L P   +E   I  RCV++IA     +   +  S   NR           G +
Sbjct: 152 VLCSCETLYPQDIAETAHIPDRCVEAIAVNACREQLVLGLS-RLNR-----------GTE 199

Query: 201 FREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFD 260
             E       +WW+ED+  L ID Y RV+ A+   G    ++I  +L  YA   L    +
Sbjct: 200 SGELKRGDSPEWWIEDLSALRIDYYARVVSAMARTGLRSESII-TSLMHYAQESLKGIRN 258

Query: 261 -----DLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREEL 315
                 L S       + ++E +V L P+D        FL  +L+V I++ V  S R EL
Sbjct: 259 CKERTKLDSGTFENEQRNVLEAIVSLFPNDN---VPLSFLFGMLRVGITINVAISCRLEL 315

Query: 316 EKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTH--EKYSQDLSVEKNDET 373
           E+RI+ +L   S+ DLLIP      ++YDV+ V  ++ C++    E+   D      +ET
Sbjct: 316 ERRIAQQLETVSLDDLLIPVVRDGDSMYDVDTVHRILVCFLKKIEEEEEYDEDCCYENET 375

Query: 374 DDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAID 433
           ++      H  +L VG+I+D YL+EIA DP L+L  F+ L + +P+ AR   DGLY+AID
Sbjct: 376 ENLTGSMCHSSLLKVGRIMDAYLAEIAPDPCLSLHKFMALIEILPDYARVMDDGLYRAID 435

Query: 434 TYLK 437
            +LK
Sbjct: 436 MFLK 439


>AT1G03010.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr1:693480-696188 FORWARD
          Length = 634

 Score =  229 bits (585), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 257/473 (54%), Gaps = 55/473 (11%)

Query: 1   MKFMKLGSKPDAFQAE-----GKSIRYVS----SELATDVTINIGEVKFYLHKFPLLSKS 51
           M  + +G    AF  +       +IR+ S    S++++D+T+ +G   F LHKFPL+S+S
Sbjct: 1   MGLVTVGELKPAFTGKRGFRLNSTIRHASEWPISDVSSDLTVQVGSSSFCLHKFPLVSRS 60

Query: 52  NRLQKLVLKASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLE 111
            +++KL+      N   + + + PGG +AFE+ AKFCYG+ + +N  N+   RCA+ YLE
Sbjct: 61  GKIRKLLADPKISN---VCLSNAPGGSEAFELAAKFCYGINIEINLLNIAKLRCASHYLE 117

Query: 112 MTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIAS-- 169
           MTED    NL  K E FL  +IF S  +SIIVL   ++L+P SEDL +V R + ++A+  
Sbjct: 118 MTEDFSEENLASKTEHFLKETIFPSILNSIIVLHHCETLIPVSEDLNLVNRLIIAVANNA 177

Query: 170 -KTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRV 228
            K  +    +   Y+++            G     +    P DWW + +  L++D ++RV
Sbjct: 178 CKEQLTSGLLKLDYSFS------------GTNIEPQ---TPLDWWGKSLAVLNLDFFQRV 222

Query: 229 MIAVKSKGRMDGTVIGEALKTYAVRWL-------PDAFDD--LTSDGRSWRYKYLVETLV 279
           + AVKSKG +   VI + L +Y  + L       P    +  L S+G+  + + +VET+V
Sbjct: 223 ISAVKSKGLIQD-VISKILISYTNKSLQGLIVRDPKLEKERVLDSEGKK-KQRLIVETIV 280

Query: 280 CLLPSD-KGLGCSCGFLLKLLKVAISVGVDDSP---REELEKRISLKLHEASVKDLLIPA 335
            LLP+  +       FL  LLK+ I+     S    R +LE+RI L+L +A ++D+LIP 
Sbjct: 281 RLLPTQGRRSSVPMAFLSSLLKMVIATSSSASTGSCRSDLERRIGLQLDQAILEDVLIPI 340

Query: 336 --RSPQTTLYDVELVQSLVNCYVT---HEKYSQDLSVEKNDETD-----DFVLRRGHGYM 385
                  T+YD++ +  + + ++     ++  +   ++  DET+     D         +
Sbjct: 341 NLNGTNNTMYDIDSILRIFSIFLNLDEDDEEEEHHHLQFRDETEMIYDFDSPGSPKQSSI 400

Query: 386 LNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           L V K++D YL+EIA DPNLT + FI L++ +P+ AR   DGLY+A+D YLKV
Sbjct: 401 LKVSKLMDNYLAEIAMDPNLTTSKFIALAELLPDHARIISDGLYRAVDIYLKV 453


>AT5G10250.1 | Symbols: DOT3 | DOT3 (DEFECTIVELY ORGANIZED
           TRIBUTARIES 3); protein binding / signal transducer |
           chr5:3217028-3219368 REVERSE
          Length = 607

 Score =  225 bits (574), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 231/453 (50%), Gaps = 75/453 (16%)

Query: 11  DAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKAS-EENSDEI 69
           ++F+ + +S  YV S++ TD++I + ++ F  HKFPL+SK   +  + LK S  EN   +
Sbjct: 35  NSFEKKDRSW-YVKSQIPTDLSIQVNDITFKAHKFPLISKCGYISSIELKPSTSENGYHL 93

Query: 70  NMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFL 129
            + +FPGG   FE   KFCY + + LN  NV   RCA+EYL MTE+ + GNLI K E F+
Sbjct: 94  KLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCASEYLYMTEEFEAGNLISKTEAFI 153

Query: 130 NSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLS 189
              +  SW+D++ VL++  +L PW+E+L+IV RC D +A K   D               
Sbjct: 154 TFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDLLAWKACND--------------- 198

Query: 190 VRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKT 249
             + I ED +   E+           DI  LDID + RV+  +K++ R    + G+ +  
Sbjct: 199 --NNIPEDVVDRNERC-------LYNDIATLDIDHFMRVITTMKAR-RAKPQITGKIIMK 248

Query: 250 YAVRWLPDAFDDL----------------TSDGR--------SWRYKYLVETLVCLLPSD 285
           YA  +LP   DDL                 + GR           +K  +E+LV +LP  
Sbjct: 249 YADNFLPVINDDLEGIKGYGLGKNELQFSVNRGRMEESNSLGCQEHKETIESLVSVLPPQ 308

Query: 286 KGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDV 345
            G   SC FLL++LK +I      +   +LEKR+ + L +A+V DLLIP    +     V
Sbjct: 309 SG-AVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQERV 367

Query: 346 ELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNL 405
            + +     ++ HE+                VL +      ++ K++D YL+EIA+DP L
Sbjct: 368 RIFE----FFLMHEQQQ--------------VLGKP-----SISKLLDNYLAEIAKDPYL 404

Query: 406 TLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
            +  F  L++ +PE+A   HDGLY+AID +LK 
Sbjct: 405 PITKFQVLAEMLPENAWKCHDGLYRAIDMFLKT 437


>AT2G47860.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr2:19599979-19602088 FORWARD
          Length = 635

 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 240/444 (54%), Gaps = 48/444 (10%)

Query: 19  SIRYVS----SELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINMLDF 74
           SIR+      S++ +D+TI +G   F LHKFPL+S+S R++KLVL++ + N   +N+   
Sbjct: 25  SIRHTPQWPVSDVTSDLTIEVGSATFSLHKFPLVSRSGRIRKLVLESKDTN---LNLAAV 81

Query: 75  PGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIF 134
           PGG ++FE+ AKFCYG+ V  N+ N+ A RC A YLEMTED+   NL  + E +L  SIF
Sbjct: 82  PGGSESFELAAKFCYGVGVQYNSSNIAALRCVAHYLEMTEDLSEKNLEARTEAYLKDSIF 141

Query: 135 RSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKI 194
               +SI VL + + LLP +E++ +VGR V++IA                    + ++++
Sbjct: 142 NDISNSITVLHSCERLLPVAEEINLVGRLVNAIAVN------------------ACKEQL 183

Query: 195 VEDGMKFREKVD------SVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALK 248
               +K  +         + P DWW   +  L +D ++RV+ A+KSKG ++  +I + L 
Sbjct: 184 ASGLLKLDQSFSCGVPETAKPCDWWGRSLPILKLDFFQRVLSAMKSKG-LNHDIISDILM 242

Query: 249 TYAVRWLPDAFDD--LTSDGRSWRYKYLV-ETLVCLLPSDKGLGC-SCGFLLKLLKVAIS 304
           +YA + L    +   + SD    R + +V E +V LLP+          FL  LLK AI 
Sbjct: 243 SYARKSLQIIREPNLVKSDSDLQRKQRIVLEAVVGLLPTQANKSSIPISFLSSLLKTAIG 302

Query: 305 VGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTHEKYSQD 364
            G   S R +LE+RIS  L +A ++D+LIPA      +YD + VQ + + ++  ++    
Sbjct: 303 SGTSVSCRSDLERRISHLLDQAILEDILIPANI--GAMYDTDSVQRIFSMFLNLDECEYR 360

Query: 365 LSVEKNDETD--------DF--VLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLS 414
              +  ++          DF          +  V K++D YL+E+A D +L  + FI L+
Sbjct: 361 DDDDDEEDAVDESEMAMYDFEGAESPKQSSIFKVSKLMDSYLAEVALDSSLPPSKFIALA 420

Query: 415 QSIPESARPNHDGLYKAIDTYLKV 438
           + +P+ AR   DGLY+A+D +LKV
Sbjct: 421 ELLPDHARVVCDGLYRAVDIFLKV 444


>AT2G30520.1 | Symbols: RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protein
           binding | chr2:13002920-13005573 REVERSE
          Length = 593

 Score =  221 bits (564), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 147/430 (34%), Positives = 228/430 (53%), Gaps = 52/430 (12%)

Query: 24  SSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAFEI 83
           S ++ TDV + +GE  F LHKF L++KSN ++KL++++ + +   IN+ D PGG + FE 
Sbjct: 27  SQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEK 86

Query: 84  CAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIV 143
            AKFCYG+   +   NV A  CAAE+L+MT+     NL  + + FL+     S   +I+V
Sbjct: 87  AAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVV 146

Query: 144 LQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFRE 203
           L++ + LLP S DL IV RCVD + +K   +                R            
Sbjct: 147 LKSCEILLPISRDLGIVRRCVDVVGAKACNEAM-----------FPCR------------ 183

Query: 204 KVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLT 263
                P +WW E++C LD+D +  V+ ++K +G +  + +  A+ TY  + L D   D +
Sbjct: 184 ----TPPNWWTEELCILDVDFFSDVVSSMKQRG-VKPSSLASAIITYTEKSLRDLVRDHS 238

Query: 264 SDGRSWRY--------------KYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDD 309
             GR  +Y              + LV+++V LLPSDKGL     FL  LL+ A+ +    
Sbjct: 239 --GRGVKYSDPGDNESDERSQQRDLVQSIVSLLPSDKGL-FPVNFLCSLLRCAVFLDTSL 295

Query: 310 SPREELEKRISLKLHEASVKDLLIPARS-PQTTLYDVELVQSLVNCYVTHEKYSQDLSVE 368
           + + ELEKRIS+ L   SV DLLIP+ +     L D++ V+ +++ +V  EK   ++ V 
Sbjct: 296 TCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEK---NVGVF 352

Query: 369 KNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGL 428
                 DF        +  V K VD YL+EIA   +LT++ F  ++  +P+SAR + D L
Sbjct: 353 NG---GDFNRGVCSVSLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDL 409

Query: 429 YKAIDTYLKV 438
           Y+AID +LK 
Sbjct: 410 YRAIDIFLKA 419


>AT3G08660.1 | Symbols:  | phototropic-responsive protein, putative
           | chr3:2631130-2633166 FORWARD
          Length = 582

 Score =  219 bits (557), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/419 (33%), Positives = 228/419 (54%), Gaps = 39/419 (9%)

Query: 25  SELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAFEIC 84
           S++A D+ + +    F LHKFPL+++S +++K+V +  +++S  I + DFPGG   FE+ 
Sbjct: 32  SDVAGDIIVVVDGESFLLHKFPLVARSGKMRKMV-RDLKDSSSMIELRDFPGGPSTFELT 90

Query: 85  AKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVL 144
            KFCYG+   + A+NVV+ RCAA YLEMTED    NLIF+ E +L+  +FRS+ +S++VL
Sbjct: 91  MKFCYGINFDITAFNVVSLRCAAGYLEMTEDYKEQNLIFRAENYLDQIVFRSFHESVLVL 150

Query: 145 QTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREK 204
            + ++    +E  +I  RCV++IA    ++          + +L  RD +          
Sbjct: 151 CSCET-QEIAETYEIPDRCVEAIA----MNACRKQLVSGLSEELKGRDCL---------- 195

Query: 205 VDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLTS 264
                 + W E++  L ID Y +V+ A+        +++  +L  YA   L    D    
Sbjct: 196 ------EMWTEELSALGIDYYVQVVSAMARLSVRSESIVA-SLVHYAKTSLKGIIDRNCQ 248

Query: 265 DGRSWRYKYLVETLVCLLPSDKGLGCS-----CGFLLKLLKVAISVGVDDSPREELEKRI 319
           + R      +VE +V LLP+D+    S      GFL  +LKV   + ++ S R ELE+RI
Sbjct: 249 EQRK-----IVEAMVNLLPNDEKGSYSLSIIPLGFLFGMLKVGTIIDIEISCRLELERRI 303

Query: 320 SLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLR 379
             +L  AS+ DLLIP+   + ++YDV+ V  ++  ++   +   D     +D T      
Sbjct: 304 GHQLETASLDDLLIPSVQNEDSMYDVDTVHRILTFFLERIEEEDDECGYDSDSTGQ---- 359

Query: 380 RGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
             H  +L VG+I+D YL EIA DP L+L  F  + +++PE +R   DG+Y+AID YLK 
Sbjct: 360 --HSSLLKVGRIMDAYLVEIAPDPYLSLHKFTAIIETLPEHSRIVDDGIYRAIDMYLKA 416


>AT5G66560.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:26564368-26566662 FORWARD
          Length = 668

 Score =  219 bits (557), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 244/477 (51%), Gaps = 70/477 (14%)

Query: 22  YVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSD-------------- 67
           + ++ L +D+ I + ++ F+LHKFPL+SKS +L +L+ +    +S               
Sbjct: 14  FCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQETRSSSSMALITVIDPKVEE 73

Query: 68  ------------------------------EINMLDFPGGHKAFEICAKFCYGMIVTLNA 97
                                          I + DFPG  ++FE+ AKFCYG+ + L+A
Sbjct: 74  TDKKGKGHEIEDDKEEEEVEEQEIEENGYPHIKLEDFPGSSESFEMVAKFCYGVKMDLSA 133

Query: 98  YNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDL 157
             VV  RCAAE+LEMTE+    NLI K E FL+ S+++S ++SI  L+  +S+ P +  L
Sbjct: 134 STVVPLRCAAEHLEMTEEYSPDNLISKTERFLSHSVYKSLRESIKALKACESVSPLAGSL 193

Query: 158 KIVGRCVDSIASK-TSVDPANITWSYT---YNRKLSVRD-KIVEDGMKFREKVDSVPKDW 212
            I  +C+DSI S+ +S DP+   W          +S  D +++  G     K  S   + 
Sbjct: 194 GITEQCIDSIVSRASSADPSLFGWPVNDGGGRGNISATDLQLIPGGAAKSRKKPSRDSNM 253

Query: 213 --WVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLTSDGRSW- 269
             W ED+ +L + ++K V+++++S G +   +I   L  YA + +P           S  
Sbjct: 254 ELWFEDLTQLSLPIFKTVILSMRS-GDLSSDIIESCLICYAKKHIPGILRSNRKPPSSSS 312

Query: 270 ------RYKYLVETLVCLLPSDK-GLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLK 322
                   + L+ET+   LP DK  +  +  FL  LL+ AI +   +  R+ LE++I  +
Sbjct: 313 TAVSENEQRELLETITSNLPLDKSSISSTTRFLFGLLRTAIILNAAEICRDLLERKIGSQ 372

Query: 323 LHEASVKDLLIPARS-PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRG 381
           L  A++ DLL+P+ S    TLYDV+LV+ ++  ++   + S    VE + ++   +L   
Sbjct: 373 LERATLDDLLVPSYSYLNETLYDVDLVERILGHFLDTLEQSNTAIVEVDGKSPSLML--- 429

Query: 382 HGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
                 VGK++DG+L+EIA D NL    F +L+ S+P+ AR   DGLY+A+D YLK 
Sbjct: 430 ------VGKLIDGFLAEIASDANLKSDKFYNLAISLPDQARLYDDGLYRAVDVYLKA 480


>AT5G64330.1 | Symbols: NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC
           HYPOCOTYL 3); protein binding / signal transducer |
           chr5:25727568-25730225 FORWARD
          Length = 746

 Score =  218 bits (556), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 163/264 (61%), Gaps = 16/264 (6%)

Query: 7   GSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENS 66
           G K D F+  G+S  +V++++ +D+ + IG++ F+LHK+PLLS+S ++ +L+ ++ + + 
Sbjct: 33  GVKTDGFELRGQSW-FVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDP 91

Query: 67  DEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIE 126
             + + D PGG +AFE+ +KFCYG+ V L A N+   RCAAEYLEMTED++ GNLIFK E
Sbjct: 92  TILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTE 151

Query: 127 VFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNR 186
            FL+  +  SW+DSI+VL++ + L PW+E+L+IV RC +SIA K   +P  I W+YT   
Sbjct: 152 AFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKA 211

Query: 187 KLSVRDKIVEDGMKFREKVDS--------------VPKDWWVEDICELDIDLYKRVMIAV 232
                        ++ E  DS              VP DWW ED+  L ID + RV+ A+
Sbjct: 212 PSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAI 271

Query: 233 KSKGRMDGTVIGEALKTYAVRWLP 256
           K KG M   ++G  +  YA +WLP
Sbjct: 272 KVKG-MRFELLGAVIMHYAGKWLP 294



 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 19/184 (10%)

Query: 272 KYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDL 331
           + +VE+L+ ++P  K    +C FLL+LL+ A  + V  +   ELEKR+ ++  +A+++DL
Sbjct: 374 RMIVESLISIIPPQKD-SVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDL 432

Query: 332 LIPA-RSPQTTLYDVELVQSLVNCYVTHEKYS----------------QDLSVEKNDETD 374
           LIP   +   T+YDV+LVQ L+  ++  E+                   D+    N+   
Sbjct: 433 LIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGG 492

Query: 375 DFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDT 434
                  +  M  V ++VD YL+E+ARD NL L  F  L++++PESAR   DGLY+AID+
Sbjct: 493 GGGGNNQNAKM-RVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDS 551

Query: 435 YLKV 438
           YLK 
Sbjct: 552 YLKA 555


>AT5G64330.2 | Symbols: NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC
           HYPOCOTYL 3); protein binding / signal transducer |
           chr5:25727568-25729510 FORWARD
          Length = 558

 Score =  218 bits (556), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 163/264 (61%), Gaps = 16/264 (6%)

Query: 7   GSKPDAFQAEGKSIRYVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENS 66
           G K D F+  G+S  +V++++ +D+ + IG++ F+LHK+PLLS+S ++ +L+ ++ + + 
Sbjct: 33  GVKTDGFELRGQSW-FVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDP 91

Query: 67  DEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIE 126
             + + D PGG +AFE+ +KFCYG+ V L A N+   RCAAEYLEMTED++ GNLIFK E
Sbjct: 92  TILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTE 151

Query: 127 VFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNR 186
            FL+  +  SW+DSI+VL++ + L PW+E+L+IV RC +SIA K   +P  I W+YT   
Sbjct: 152 AFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKA 211

Query: 187 KLSVRDKIVEDGMKFREKVDS--------------VPKDWWVEDICELDIDLYKRVMIAV 232
                        ++ E  DS              VP DWW ED+  L ID + RV+ A+
Sbjct: 212 PSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAI 271

Query: 233 KSKGRMDGTVIGEALKTYAVRWLP 256
           K KG M   ++G  +  YA +WLP
Sbjct: 272 KVKG-MRFELLGAVIMHYAGKWLP 294



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 19/184 (10%)

Query: 272 KYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDL 331
           + +VE+L+ ++P  K    +C FLL+LL+ A  + V  +   ELEKR+ ++  +A+++DL
Sbjct: 374 RMIVESLISIIPPQKD-SVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDL 432

Query: 332 LIPARSPQ-TTLYDVELVQSLVNCYVTHEKYS----------------QDLSVEKNDETD 374
           LIP  + +  T+YDV+LVQ L+  ++  E+                   D+    N+   
Sbjct: 433 LIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGG 492

Query: 375 DFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDT 434
                  +  M  V ++VD YL+E+ARD NL L  F  L++++PESAR   DGLY+AID+
Sbjct: 493 GGGGNNQNAKM-RVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDS 551

Query: 435 YLKV 438
           YLKV
Sbjct: 552 YLKV 555


>AT3G49970.1 | Symbols:  | phototropic-responsive protein, putative
           | chr3:18527216-18529066 REVERSE
          Length = 526

 Score =  206 bits (524), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/422 (34%), Positives = 225/422 (53%), Gaps = 71/422 (16%)

Query: 35  IGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAFEICAKFCYGMIVT 94
           + ++ F LHKFPL+SK   ++KL  ++S  +S+ I + DFPGG + FE+  KFCY +   
Sbjct: 2   LEKLSFLLHKFPLVSKCGFIKKLASESSN-DSNIIRIPDFPGGAEGFELVIKFCYDISFE 60

Query: 95  LNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWS 154
           +N  N+    CAAEYLEMTE+    NL+  IEV+LN  I +S   S+ VLQ ++ LLP +
Sbjct: 61  INTENIAMLLCAAEYLEMTEEHSVENLVETIEVYLNEVILKSLSKSVKVLQKSQDLLPIA 120

Query: 155 EDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWV 214
           E +++V RC+DSIA             Y   ++    + IV               DWW 
Sbjct: 121 ERVRLVDRCIDSIA-------------YAICQESQSNEDIV---------------DWWA 152

Query: 215 EDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTY---AVRWLPDAFDDLTSD----GR 267
           +D+  L ID+++RV++A+ ++G      +G  LK Y   A+R L    + LT      G+
Sbjct: 153 DDLAVLKIDMFRRVLVAMIARG-FKRYSLGPVLKLYAEKALRGLVRFLNFLTEQCDIFGK 211

Query: 268 SWR---------YKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKR 318
             +          + ++ET+V LLP ++    S  FL  LL+ AI +    + R +LEKR
Sbjct: 212 EAKKMEAEQEHEKRLILETIVSLLPRERN-SVSVSFLSILLRAAIYLETTVACRLDLEKR 270

Query: 319 ISLKLHEASVKDLLIPARS--PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDF 376
           + L+L +A + DLLIP  S     T+ DV+ VQ ++  Y+  E       VE N  + DF
Sbjct: 271 MGLQLRQAVIDDLLIPYYSFNGDNTMLDVDTVQRILMNYLEFE-------VEGN--SADF 321

Query: 377 VLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYL 436
                     ++G++++ YL+EIA D N+  A FI  ++ IP+ +R     +Y+AID +L
Sbjct: 322 A--------SDIGELMETYLAEIASDRNINFAKFIGFAECIPKQSR-----MYRAIDIFL 368

Query: 437 KV 438
           K 
Sbjct: 369 KT 370


>AT2G30520.3 | Symbols: RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protein
           binding | chr2:13002920-13005153 REVERSE
          Length = 545

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 213/407 (52%), Gaps = 52/407 (12%)

Query: 47  LLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCA 106
           L++KSN ++KL++++ + +   IN+ D PGG + FE  AKFCYG+   +   NV A  CA
Sbjct: 2   LVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCA 61

Query: 107 AEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDS 166
           AE+L+MT+     NL  + + FL+     S   +I+VL++ + LLP S DL IV RCVD 
Sbjct: 62  AEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDV 121

Query: 167 IASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYK 226
           + +K   +                R                 P +WW E++C LD+D + 
Sbjct: 122 VGAKACNEAM-----------FPCR----------------TPPNWWTEELCILDVDFFS 154

Query: 227 RVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLTSDGRSWRY--------------K 272
            V+ ++K +G +  + +  A+ TY  + L D   D +  GR  +Y              +
Sbjct: 155 DVVSSMKQRG-VKPSSLASAIITYTEKSLRDLVRDHS--GRGVKYSDPGDNESDERSQQR 211

Query: 273 YLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLL 332
            LV+++V LLPSDKGL     FL  LL+ A+ +    + + ELEKRIS+ L   SV DLL
Sbjct: 212 DLVQSIVSLLPSDKGL-FPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLL 270

Query: 333 IPARS-PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKI 391
           IP+ +     L D++ V+ +++ +V  EK   ++ V       DF        +  V K 
Sbjct: 271 IPSFTYDGERLLDLDSVRRIISAFVEKEK---NVGVFNGG---DFNRGVCSVSLQRVAKT 324

Query: 392 VDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           VD YL+EIA   +LT++ F  ++  +P+SAR + D LY+AID +LK 
Sbjct: 325 VDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDLYRAIDIFLKA 371


>AT2G30520.2 | Symbols: RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protein
           binding | chr2:13002920-13005153 REVERSE
          Length = 545

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 213/407 (52%), Gaps = 52/407 (12%)

Query: 47  LLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAFEICAKFCYGMIVTLNAYNVVAARCA 106
           L++KSN ++KL++++ + +   IN+ D PGG + FE  AKFCYG+   +   NV A  CA
Sbjct: 2   LVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCA 61

Query: 107 AEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDS 166
           AE+L+MT+     NL  + + FL+     S   +I+VL++ + LLP S DL IV RCVD 
Sbjct: 62  AEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDV 121

Query: 167 IASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVDSVPKDWWVEDICELDIDLYK 226
           + +K   +                R                 P +WW E++C LD+D + 
Sbjct: 122 VGAKACNEAM-----------FPCR----------------TPPNWWTEELCILDVDFFS 154

Query: 227 RVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDLTSDGRSWRY--------------K 272
            V+ ++K +G +  + +  A+ TY  + L D   D +  GR  +Y              +
Sbjct: 155 DVVSSMKQRG-VKPSSLASAIITYTEKSLRDLVRDHS--GRGVKYSDPGDNESDERSQQR 211

Query: 273 YLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLL 332
            LV+++V LLPSDKGL     FL  LL+ A+ +    + + ELEKRIS+ L   SV DLL
Sbjct: 212 DLVQSIVSLLPSDKGL-FPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLL 270

Query: 333 IPARS-PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLRRGHGYMLNVGKI 391
           IP+ +     L D++ V+ +++ +V  EK   ++ V       DF        +  V K 
Sbjct: 271 IPSFTYDGERLLDLDSVRRIISAFVEKEK---NVGVFNGG---DFNRGVCSVSLQRVAKT 324

Query: 392 VDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           VD YL+EIA   +LT++ F  ++  +P+SAR + D LY+AID +LK 
Sbjct: 325 VDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDLYRAIDIFLKA 371


>AT3G50840.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr3:18896353-18898374 REVERSE
          Length = 569

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/437 (31%), Positives = 226/437 (51%), Gaps = 58/437 (13%)

Query: 22  YVSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENS-DEINMLDFPGGHKA 80
           + ++ L +D+ I + ++ F+LHKFPL+SKS +L +L+ +  +      I + +FPGG + 
Sbjct: 11  FYTTGLPSDIEIEVDDITFHLHKFPLMSKSKKLHQLITEQEQSKVYSHIKLENFPGGSEI 70

Query: 81  FEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDS 140
           FE+  K  YG  V ++    V  RCAAEYLEMTE+    NLI K E FL+  +F + ++S
Sbjct: 71  FEMVIKISYGFKVDISVSTAVPLRCAAEYLEMTEEYSPENLISKTEKFLSEFVFTNVQES 130

Query: 141 IIVLQTTKSLLPWSEDLKIVGRCVDSIA-SKTSVDPANI-TWS------YTYNRKLSVRD 192
           I  L+  +S+   +E L I  +C+DSI    +S DP++   W       +T +RK   +D
Sbjct: 131 IKALKACESVSSLAESLCITEQCIDSIVFQASSTDPSSFYGWPINNGGIFTVDRKKQSKD 190

Query: 193 KIVEDGMKFREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAV 252
              E                W ED+ EL   +++RV++++KS   +   ++  +L TYA 
Sbjct: 191 SKTE---------------LWFEDLTELSFPIFRRVILSMKS-SVLSPEIVERSLLTYAK 234

Query: 253 RWLPDAFDDLTSDGRSW----------RYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVA 302
           + +P      ++   S           + + L+ET+   LP       +   L  LL+ A
Sbjct: 235 KHIPGISRSSSASSSSSSSSTTIASENQQRELLETITSDLPLT---ATTTRSLFGLLRAA 291

Query: 303 ISVGVDDSPREELEKRISLKLHEASVKDLLIPARS-PQTTLYDVELVQSLVNCYVTHEKY 361
           I +   ++ R+ LEK+I   L +A++ DLLIP+ S    TLYD++LV+ L+       ++
Sbjct: 292 IILNASENCRKFLEKKIGSNLEKATLDDLLIPSYSYLNETLYDIDLVERLLR------RF 345

Query: 362 SQDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESA 421
            ++++V  +  T              VG+++DG L EIA D NL    F +L+  +P  A
Sbjct: 346 LENVAVSSSSLT-------------VVGRLIDGVLGEIASDANLKPEQFYNLAVLLPVQA 392

Query: 422 RPNHDGLYKAIDTYLKV 438
           R   DGLY+A+D Y K 
Sbjct: 393 RVYDDGLYRAVDIYFKT 409


>AT5G48130.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:19516291-19518450 FORWARD
          Length = 625

 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 200/419 (47%), Gaps = 45/419 (10%)

Query: 27  LATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINM-LDFPGGHKAFEICA 85
           L   V + +    F LHK  L +KS        K  E+   EI +  +FPGG + FE   
Sbjct: 39  LPASVHVRVCNKSFNLHKSLLCAKSG-----YFKEREDQLSEIEIPQEFPGGAETFEKIM 93

Query: 86  KFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQ 145
            F YG    ++ +N+   RCAA++LEMTE    GNL  + +++LN  + ++W D+++VL+
Sbjct: 94  LFIYGCPTLIHPFNIAGLRCAAQFLEMTEQHSTGNLCERFDLYLNQVVLQNWDDTLVVLK 153

Query: 146 TTKSLLPWSEDLKIVGRCVDSIASKTS---VDPANITWSYTYNRKLSVRDKIVEDGMKFR 202
             + L+PWSEDL IV RC++S+A       +DP          + + + + +V    ++ 
Sbjct: 154 KCQDLVPWSEDLLIVSRCIESLAFTACMEILDPER-----RREKPVIMLEGMVNQPWEYT 208

Query: 203 EKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDDL 262
                + +D W++D+ +L  + +K+++ +++ +G M    +   +  YA +        +
Sbjct: 209 NIERIINQDTWIKDLTDLPFEFFKKIIGSLRRQG-MKERYVSPLVALYASK-------SV 260

Query: 263 TSDGRSWRYKYLVETLVCLLPSDKGLG-CSCGFLLKLLKVAISVGVDDSPREELEKRISL 321
             +G++     L   L  LL  DK       GF    L  A ++  D   +  L+ +I  
Sbjct: 261 IPEGQT-NTDILQRALDLLLTRDKAYRFVPVGFYFACL--AHNLKHDTVLK--LQDQIVS 315

Query: 322 KLHEASVKDLLIPARSPQTTLYDVELV--QSLVNCYVTHEKYSQDLSVEKNDETDDFVLR 379
            LH A  ++ + P    +   +  EL+  +SL + YV+ E      S   N         
Sbjct: 316 LLHTAQPENFIYPKAGNRQVAFSQELLTMESLFSVYVSTESERHLTSSSSN--------- 366

Query: 380 RGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
                 + VGK+ D +LS +  D  +    FI+L +++P S R +HD LY A++ +L+V
Sbjct: 367 ------VRVGKLWDIFLSRLPYDQEMKTTRFIELIETVPMSFRESHDQLYLAVNAFLQV 419


>AT3G19850.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr3:6898383-6901157 REVERSE
          Length = 554

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 213/435 (48%), Gaps = 47/435 (10%)

Query: 27  LATDVTINIG-EVKFYLHKFPLLSKSNRLQKLVLKASEENSDE------INMLDFPGGHK 79
           L  D+ IN+  +  F++++  +   S  L+K++ +++++  +       I + DFPGG  
Sbjct: 3   LCCDLQINLNNQFTFFVNQDLISEYSGFLRKMIKQSNKKKKNHKNSRIIIEVEDFPGGSD 62

Query: 80  AFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKD 139
            F++  +FCYG  ++++  NV    C++ +LEMTE +   NL+ + E FL    + SW D
Sbjct: 63  GFDLVLRFCYGGGISIDVSNVSILHCSSVFLEMTEKLCSSNLLLRTEKFLEGMFYWSWND 122

Query: 140 SIIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTY-------NRKLSVRD 192
            ++ L++ + +   ++   +V + V  + +K    P N   S+ +       +   S   
Sbjct: 123 IVLCLKSCEQVFLHADSYGLVDKLVFGVLAKI---PQNSDVSHVFSSSSPSSSASASASS 179

Query: 193 KIVEDGM--KFREKVDS-------VPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVI 243
           +  E  M   + +K  +          +WW +D+  L   + ++++  + +  + + +++
Sbjct: 180 QSPETAMIRSYSDKRSTSRSFSCRTSNEWWFDDMSILGPKIIEKLINTLGAHDKNNDSLV 239

Query: 244 GEALKTYAVRWLPDAFDDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAI 303
              L  + + +L     + +++     Y  L +T V  +        SC  +  +L+V  
Sbjct: 240 ---LTKFLLHYLKTKVPNKSTN--KLEYSGLADTAVQGVVFAAKTAFSCRKMFWVLRVLS 294

Query: 304 SVGVDDSPREELEKRISLKLHEASVKDLLIPARSP-QTTLYDVELVQSLVNCYVTHEKYS 362
              +    R  LE+ I   L +A++ DLLIPA    +  +YDV+LV  L+  +V      
Sbjct: 295 GFSISKESRIGLERVIGEMLDQATLDDLLIPAGGKGEKGVYDVDLVIRLLKVFVRI---- 350

Query: 363 QDLSVEKNDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESAR 422
                  N E  D  LR     M  +GK++D YL EI+ D NL ++ F+++++S+P+SAR
Sbjct: 351 ------GNTEEGDQNLR-----MRRIGKLIDKYLREISPDQNLKVSKFLEVAESLPDSAR 399

Query: 423 PNHDGLYKAIDTYLK 437
              DGLY+AI+ YL+
Sbjct: 400 DWFDGLYRAINIYLE 414


>AT2G47860.2 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr2:19600465-19602088 FORWARD
          Length = 517

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 174/347 (50%), Gaps = 41/347 (11%)

Query: 112 MTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCVDSIASKT 171
           MTED+   NL  + E +L  SIF    +SI VL + + LLP +E++ +VGR V++IA   
Sbjct: 1   MTEDLSEKNLEARTEAYLKDSIFNDISNSITVLHSCERLLPVAEEINLVGRLVNAIAVN- 59

Query: 172 SVDPANITWSYTYNRKLSVRDKIVEDGMKFREKVD------SVPKDWWVEDICELDIDLY 225
                            + ++++    +K  +         + P DWW   +  L +D +
Sbjct: 60  -----------------ACKEQLASGLLKLDQSFSCGVPETAKPCDWWGRSLPILKLDFF 102

Query: 226 KRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFDD--LTSDGRSWRYKYLV-ETLVCLL 282
           +RV+ A+KSKG ++  +I + L +YA + L    +   + SD    R + +V E +V LL
Sbjct: 103 QRVLSAMKSKG-LNHDIISDILMSYARKSLQIIREPNLVKSDSDLQRKQRIVLEAVVGLL 161

Query: 283 PSDKGLGC-SCGFLLKLLKVAISVGVDDSPREELEKRISLKLHEASVKDLLIPARSPQTT 341
           P+          FL  LLK AI  G   S R +LE+RIS  L +A ++D+LIPA      
Sbjct: 162 PTQANKSSIPISFLSSLLKTAIGSGTSVSCRSDLERRISHLLDQAILEDILIPANI--GA 219

Query: 342 LYDVELVQSLVNCYVTHEKYSQDLSVEKNDETD--------DF--VLRRGHGYMLNVGKI 391
           +YD + VQ + + ++  ++       +  ++          DF          +  V K+
Sbjct: 220 MYDTDSVQRIFSMFLNLDECEYRDDDDDEEDAVDESEMAMYDFEGAESPKQSSIFKVSKL 279

Query: 392 VDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAIDTYLKV 438
           +D YL+E+A D +L  + FI L++ +P+ AR   DGLY+A+D +LKV
Sbjct: 280 MDSYLAEVALDSSLPPSKFIALAELLPDHARVVCDGLYRAVDIFLKV 326


>AT1G52770.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr1:19656009-19657546 FORWARD
          Length = 454

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 38/245 (15%)

Query: 213 WVEDICELDIDLYKRVMIAVKSKG-RMDGTVIGEALKTYAVRWLPDAFD----------- 260
           W +D C L ID + + +  +KSKG R D  +IG  +  YA +WLPD  D           
Sbjct: 28  WFDDGCILGIDYFVKTIAGIKSKGVRPD--LIGSIIVHYASQWLPDLSDIVLNSDDQQPQ 85

Query: 261 ------DLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREE 314
                   +      + +  VETL+ ++P ++     C FLL+LL+ A  VG D + + E
Sbjct: 86  PQQQSESFSVTAFVMKKRSFVETLIGIIPPERD-SVPCDFLLRLLRTANMVGADANYKAE 144

Query: 315 LEKRISLKLHEASVKDLLIPARSPQ-TTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDET 373
           LE RIS +L +AS+K+L+IP+ S    TL DVEL+  LV  +                  
Sbjct: 145 LEARISWQLDQASLKELMIPSFSHTCGTLLDVELMTRLVKKFAG---------------L 189

Query: 374 DDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKAID 433
           D+  ++ G   ++ V K+VD YL+E A D +LTL+ FI L +++P  AR   DGLY+AID
Sbjct: 190 DNEGVKSG-ASLIKVAKLVDSYLAEAALDGDLTLSEFISLVEALPNHARVTEDGLYRAID 248

Query: 434 TYLKV 438
           TYLK 
Sbjct: 249 TYLKA 253


>AT1G50280.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr1:18623857-18626292 REVERSE
          Length = 525

 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 204/426 (47%), Gaps = 32/426 (7%)

Query: 29  TDVTINI-GEVKFYLHKFPLLSKSNRLQKLVLKASEENSD-----EINMLDFPGGHKAFE 82
            D+ IN+ G+  F+L++  +   S  L+K++ ++ ++ +       I + DFPGG   FE
Sbjct: 5   NDLKINLNGQYTFFLNQNVISKYSGSLRKMIKQSKKKRNKKKRIITIEINDFPGGPDGFE 64

Query: 83  ICAKFCY--GMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDS 140
           + ++FCY  G I+ ++  NV    C + +L M+E     NL  + E FL    + SW D 
Sbjct: 65  LVSRFCYHNGEIL-IDVSNVSTLYCCSVFLGMSEKFCFSNLFLQTEKFLEEVFYGSWSDI 123

Query: 141 IIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVE---- 196
           +  L+  + +   ++   +V + + +  +K S +  + + S   +   S+  ++ +    
Sbjct: 124 VSCLKNCEQVFFQADSYGLVDKLIFAALNKISQNSDDFSSSSLSSFASSLSPEMAKNTSE 183

Query: 197 -DGMKFREKVD-SVPKDWWVEDICELDIDL-YKRVMIAVKSKGRMDGTVIGEALKTYAVR 253
            DG      V      +WW ED+  L   +  K VMI    K  +   V+   L  Y   
Sbjct: 184 SDGRYISRSVACGRSNEWWFEDMTNLSPKIILKLVMIIGAYKTNIKSLVLTRFLLHYLKT 243

Query: 254 WLPDAFDDLTSDGRS-WRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPR 312
            L       T   R+   Y  L +T V  + S      SC  L  +L+V  S  +    R
Sbjct: 244 KLQTKSRTTTELMRNKLEYSDLADTAVRGVISAGTRTFSCRKLFWILRVLSSFSLSRESR 303

Query: 313 EELEKRISLKLHEASVKDLLIPAR-SPQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKND 371
             LE  I   L +A++ DLLI AR S ++  Y+V+LV  L+  +V + +  ++ S E+N 
Sbjct: 304 IGLETLIGEMLEQATLDDLLISARGSRESGFYNVDLVIRLLKVFVKNREEEEEESRERN- 362

Query: 372 ETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKA 431
                        M  +GK++D YL EI+ D NL +  F+ +++S+P+SAR   DG+Y+A
Sbjct: 363 -------------MKEIGKLIDKYLREISPDQNLKVPKFLGVAESLPDSARDCFDGVYRA 409

Query: 432 IDTYLK 437
           ID YL+
Sbjct: 410 IDIYLQ 415


>AT3G15570.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr3:5270267-5271700 REVERSE
          Length = 452

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 42/249 (16%)

Query: 213 WVEDICELDIDLYKRVMIAVKSKG-RMDGTVIGEALKTYAVRWLPDAFDDLTS------- 264
           + ++ C  D++ + + +  +KSKG R D  +IG  +  YA +WLPD   ++++       
Sbjct: 29  YFDESCIQDMNYFVKTITGIKSKGIRPD--LIGSIIAHYASKWLPDLSGNVSAIISSTSL 86

Query: 265 --------------DGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDS 310
                              + ++ VETL+ +LP +K     C FLL+LL+ A  VG + +
Sbjct: 87  ESKNNHNDTQPESVTASVMKKRFFVETLIGILPPEKD-SVPCNFLLRLLRTAKMVGANPN 145

Query: 311 PREELEKRISLKLHEASVKDLLIPARS-PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEK 369
              ELE R+S +L +AS+K+L+IP+ S    TL D+ELV  LVN +   +      +   
Sbjct: 146 YLTELETRVSWQLDQASLKELMIPSFSYTSGTLLDIELVTRLVNKFSGLDSEGVKTAAA- 204

Query: 370 NDETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLY 429
                          ++ V K+VD YL+E A D  L L  FI L  ++P  AR   DGLY
Sbjct: 205 ---------------LVKVAKLVDSYLAEAAVDGGLALPEFISLITALPSHARTTEDGLY 249

Query: 430 KAIDTYLKV 438
           +AIDTYLK 
Sbjct: 250 RAIDTYLKA 258


>AT5G17580.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr5:5795302-5797031 FORWARD
          Length = 548

 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 195/424 (45%), Gaps = 42/424 (9%)

Query: 23  VSSELATDVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEENSDEINMLDFPGGHKAFE 82
           +S+   +D+ IN+  V F+L K  L  +S+++  L L+ +E +   + + D     + FE
Sbjct: 1   MSASYVSDLHINVKGVPFHLCKEMLAKRSSKVSSL-LERNEIDELRLILRDLEVDPETFE 59

Query: 83  ICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSII 142
           + A+FC G      +  +V+  C A YL M E+    NL+ K   FL   +F SW ++I 
Sbjct: 60  LVARFCNGSEFKFTSDTIVSVLCIAYYLGMNEEQSSNNLLGKASEFLEHRVFPSWSETIN 119

Query: 143 VLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLS--VRDKIVEDGMK 200
            L++         D+ +V    DS+  K S DP          R L   ++++   D  +
Sbjct: 120 ALRSGDKSFDKLADVGLVDVFFDSLIEKASYDP----------RLLGELIKNRAETDDYR 169

Query: 201 FREKVDSVPKDWWVEDICELDIDLYKRVMI-AVKSKGRMDGTVIGEALKTYAVRWLPDAF 259
              +      DW  ED+  + + LY+  MI A+KS+      ++    K YA +W+ D  
Sbjct: 170 PNPRRRLFVIDWKSEDLITIPLRLYEPFMIRAIKSRSIPVEYIVLSVCK-YAKKWVFDTE 228

Query: 260 DDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRI 319
           + L+   R       +E +  LLP  +GL  SC  L + LK +I +      +     RI
Sbjct: 229 ESLSGQKRE-----AIEVVERLLPYQRGL-ISCELLFESLKHSIWLEASSECQNGFMIRI 282

Query: 320 SLKLHEASVKDLLIPARS---PQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDF 376
             +L  A   DL I +R          ++ELV+++V  + T+  Y+     E ++    F
Sbjct: 283 CKQLDMAKSTDLKILSRGYGEKAEGFENIELVKTVVKSFYTY--YAN----EDSETVSHF 336

Query: 377 VLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQ---SIPESARPNHDGLYKAID 433
           V          V K+ + +L   A + +L L +F++L++   ++ +      DG+Y+AID
Sbjct: 337 V---------KVAKLSEEFLFLAASEASLKLEAFVELAEMTVAVSQGILSYSDGIYRAID 387

Query: 434 TYLK 437
            +L+
Sbjct: 388 VFLE 391


>AT3G22104.1 | Symbols:  | phototropic-responsive NPH3
           protein-related | chr3:7789814-7792179 FORWARD
          Length = 506

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 201/427 (47%), Gaps = 64/427 (14%)

Query: 29  TDVTINI-GEVKFYLHKFPLLSKSNRLQKLVLKASEENSD-EINMLDFPGGHKAFEICAK 86
           +D+ ++I GE   +L+K  + + S  L+KL+ K++  + + ++   DFPGG ++FE  ++
Sbjct: 6   SDLEVDINGEQTIFLNKQIICAYSGTLRKLLGKSTSSSGNLKVIFNDFPGGAESFEFVSR 65

Query: 87  FCY--GMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVL 144
           FCY  G +  + + NVV   CAA+++E+T+ ++      + E  +    + +W + ++ L
Sbjct: 66  FCYNDGRVAVMPS-NVVFLHCAAKFMEVTKVLE------QTEKCMEEIRYWAWPEVLLCL 118

Query: 145 QTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMKFREK 204
           +  + +    E   +  + +D++  K  +    I  S +     S       D   FR  
Sbjct: 119 KQCQEVETSPEVDSLAAKLMDALVEKLCL---TIEMSPS-----SAGSACSPDSSLFRFS 170

Query: 205 VDS----------VPKDWWVEDICELD---IDLYKRVMIAVKSKGRMDGTVIGEALKTYA 251
            DS          V   WW +++  L    ++++ ++M+  K     D  +I   L  Y 
Sbjct: 171 CDSKSTESFKNCSVRLTWWFDEVLVLSSGLVEMFLKLMVLRK----FDNLIISRFLFYYQ 226

Query: 252 VRWLPDAFDDLTSDGRSWRYKYLVETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSP 311
                  F   +S  +    + +++TL C+L  D+     C  L  +L++A+ + ++ S 
Sbjct: 227 ----KVKFCSASSHEKRKILETIIDTL-CVL--DRSC-VPCKSLFAVLRLALGLNINKSC 278

Query: 312 REELEKRISLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKND 371
             +LE  I  +L +A++ +LL+P+ S  + LY V LV      ++   +    L      
Sbjct: 279 MNKLEVMIGHQLDQATLDNLLVPSPSKSSHLYYVNLVLRFTKAFLDGARSGLQLK----- 333

Query: 372 ETDDFVLRRGHGYMLNVGKIVDGYLSEIARDPNLTLASFIDLSQSIPESARPNHDGLYKA 431
                           V  ++D Y++E+A DP L  + F+ L   +P+SAR +H+ +Y+A
Sbjct: 334 ---------------KVSSLIDQYIAEVAPDPCLKPSKFLSLITLVPDSARESHEDIYRA 378

Query: 432 IDTYLKV 438
           ID YL+ 
Sbjct: 379 IDMYLEA 385


>AT3G03510.1 | Symbols:  | phototropic-responsive NPH3 family
           protein | chr3:836340-837707 FORWARD
          Length = 455

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 168/363 (46%), Gaps = 66/363 (18%)

Query: 81  FEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDS 140
           F +  +FCYG  + L+A N+V+  C A YLEM++D    NL+ K   FL   +       
Sbjct: 8   FHLVTRFCYGYKIELSADNIVSVLCIAYYLEMSDDHSSNNLLNKAVTFLEQRV------- 60

Query: 141 IIVLQTTKSLLPWSEDLKIVGRCVDSIASKTSVDPANITWSYTYNRKLSVRDKIVEDGMK 200
                    L+ WSE +K +  C D I  K     AN+     +       D ++E  + 
Sbjct: 61  ---------LMSWSETVKALCICSDKILDKL----ANVGLIEVF------LDSLIEKALN 101

Query: 201 FREKVDSVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGTVIGEALKTYAVRWLPDAFD 260
                        ++D+  L + LY+ +++ V SK  +    +  ++  YA RW+   F+
Sbjct: 102 ---------DTRLLQDLITLPLRLYEPLILEV-SKHNVSLENLVASVCNYANRWV---FE 148

Query: 261 DLTSDGRSWRYKYL-VETLVCLLPSDKGLGCSCGFLLKLLKVAISVGVDDSPREELEKRI 319
             + DG   R K   +E +  LLP  +G   S GFL K LK +I +G     R+  E RI
Sbjct: 149 KDSGDGSVSRNKREGIEAVERLLPHQRG-TISSGFLFKSLKESIFLGACSDCRKGFEVRI 207

Query: 320 SLKLHEASVKDLLIPARSPQTTLYDVELVQSLVNCYVTHEKYSQDLSVEKNDETDDFVLR 379
           S +L  A  KDL I + +   + YD+EL+++++  + +            ND   D    
Sbjct: 208 SNQLDMARAKDLQILSPTEDGS-YDIELLKTILKSFYS------------NDSVPDL--- 251

Query: 380 RGHGYMLNVGKIVDGYLSE-IARDPNLTLASFIDLSQSIPESARPN----HDGLYKAIDT 434
                 ++V ++++ +L E  A D  L + +F +L++ I  +A  +     DG+Y+AID 
Sbjct: 252 ---SRFVSVARMLEEFLLEAAASDAGLRVGTFKELAE-IAVAASCDVLSYSDGIYRAIDV 307

Query: 435 YLK 437
           YL+
Sbjct: 308 YLE 310


>AT3G49900.1 | Symbols:  | BTB/POZ domain-containing protein |
           chr3:18500635-18502614 REVERSE
          Length = 517

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 12/144 (8%)

Query: 30  DVTINIGEVKFYLHKFPLLSKSNRLQKLVLKASEEN-SDEINMLDFPGGHKAFEICAKFC 88
           DV +N+G  +F+LHK PL SKS  L++ +   +E   S  +N+       + F + A FC
Sbjct: 68  DVFVNVGGTRFHLHKDPL-SKSGYLKRHLTGVNELTLSPPLNITA-----ETFSLVAGFC 121

Query: 89  YGMIVTLNAYNVVAARCAAEYLEMTEDVD----RGNLIFKIEVFLNSSIFRSWKDSIIVL 144
           YG  + L   NVV+ R A E L +TE  D    R +L    E +L   +F +     IVL
Sbjct: 122 YGAHIELTPSNVVSLRIAVEVLLITEADDGGRVRDSLRNLTESYLRRVVFVNVDYIQIVL 181

Query: 145 QTTKSLLPWSEDLK-IVGRCVDSI 167
           ++   LLP SE    ++GRCV+++
Sbjct: 182 RSCLLLLPESETTAFLIGRCVEAL 205