Jatropha Genome Database

JcCA0312321.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.40 + phase: 0 
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03990.1 | Symbols:  | unknown protein | chr5:1075957-1077358...   109   2e-24
AT3G51940.1 | Symbols:  | unknown protein | chr3:19273708-192751...    92   2e-19

>AT5G03990.1 | Symbols:  | unknown protein | chr5:1075957-1077358
           FORWARD
          Length = 302

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 67/92 (72%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGLP 82
           +PAWEK FC  +G + W   + AK++   + ++++WDDSAG+++F NAKSRFWA+  GL 
Sbjct: 41  VPAWEKDFCAVIGSVPWWKVVEAKRFMHIYDRVVQWDDSAGEDAFKNAKSRFWAEINGLT 100

Query: 83  FKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKA 114
               LP PD+YID +DW A++D++L+LDLE+ 
Sbjct: 101 CDLSLPDPDVYIDDVDWDAEVDNELILDLERG 132


>AT3G51940.1 | Symbols:  | unknown protein | chr3:19273708-19275157
           REVERSE
          Length = 453

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFT-KIMEWDDSAGKESFYNAKSRFWAKNGGL 81
           IP WEK+FC  +G + WQ  + AK + S +   ++ WDDSA +++F+N K RFW++  GL
Sbjct: 33  IPVWEKRFCEVIGSVPWQKVVEAKDFKSWYNGNVITWDDSACEDTFHNEKKRFWSQVNGL 92

Query: 82  PFKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKA 114
                +P PD+YI  +DW   +D +L+ DLEKA
Sbjct: 93  HCDVSIPDPDLYISEVDWDTFVDPELIRDLEKA 125