Jatropha Genome Database

JcCA0312321.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.30 + phase: 0 
         (425 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50450.1 | Symbols:  | binding / catalytic | chr1:18687902-18...   587   e-168

>AT1G50450.1 | Symbols:  | binding / catalytic |
           chr1:18687902-18690348 REVERSE
          Length = 428

 Score =  587 bits (1512), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/428 (66%), Positives = 351/428 (82%), Gaps = 3/428 (0%)

Query: 1   MARALF--HLKSASVMACAKQSNHDN-SRVQLLEKNRNAKXXXXXXXXXXXXSTAIALSK 57
           M RAL     ++    A ++++ +D    V+  + +RN +            STA ALSK
Sbjct: 1   MTRALLLQPYRATVRAASSRETQYDGVPEVKFSDPSRNYRVLVLGGTGRVGGSTATALSK 60

Query: 58  LCPDLRIVIGGRNREKGAAMVAKLGKNSDFVEVNIDNVDSLEAALSDVDLVVHAAGPFQQ 117
           LCP+L+IV+GGRNREKG AMVAKLG+NS+F +V+I++   LE +L DVDLVVHAAGPFQQ
Sbjct: 61  LCPELKIVVGGRNREKGEAMVAKLGENSEFSQVDINDAKMLETSLRDVDLVVHAAGPFQQ 120

Query: 118 AEKCSVLEAAIETKTAYVDVCDDTNYALRAKSFKDRALAADIPAITTGGIYPGVSNVMAA 177
           A +C+VLEAAI+TKTAY+DVCDDT+YA RAKS +  A+AA+IPA+TT GIYPGVSNVMAA
Sbjct: 121 APRCTVLEAAIKTKTAYLDVCDDTSYAFRAKSLEAEAIAANIPALTTAGIYPGVSNVMAA 180

Query: 178 ELVRAARTESKGKPDRLRFXXXXXXXXXXXPTILATSFLLLGEEVVAYNKGEKIKLKPFS 237
           E+V AAR+E KGKP++LRF           PTILATSFLLLGEEV AY +GEK+KL+P+S
Sbjct: 181 EMVAAARSEDKGKPEKLRFSYYTAGTGGAGPTILATSFLLLGEEVTAYKQGEKVKLRPYS 240

Query: 238 GMLNIDFGKGIGKRDVYLLNLPEVRSAYEVLGIPTVSARFGTAPFFWNWGMEVMTNLLPP 297
           GM+ +DFGKGI KRDVYLLNLPEVRS +EVLG+PTV ARFGTAPFFWNWGME+MT LLP 
Sbjct: 241 GMITVDFGKGIRKRDVYLLNLPEVRSTHEVLGVPTVVARFGTAPFFWNWGMEIMTKLLPS 300

Query: 298 EFLRDRSKVQELVQLFDPLVRAVDGIAGERVSMRVDLECTDGRNTVAIFTHQRLSVSVGN 357
           E LRDR+KVQ++V+LFDP+VRA+DG AGERVSMRVDLEC+DGR TV +F+H++LSVSVG 
Sbjct: 301 EVLRDRTKVQQMVELFDPVVRAMDGFAGERVSMRVDLECSDGRTTVGLFSHKKLSVSVGV 360

Query: 358 ATAAFVLAVLEGSTQPGVWFPEEPEGIIIDAREVLLQRAAEGTINFVINKPPWMVETEPK 417
           +TAAFV A+LEGSTQPGVWFPEEP+GI ++AREVLL+RA++GT NF++NKPPWMVETEPK
Sbjct: 361 STAAFVAAMLEGSTQPGVWFPEEPQGIAVEAREVLLKRASQGTFNFILNKPPWMVETEPK 420

Query: 418 LLGLGIYV 425
            + LGIYV
Sbjct: 421 EVVLGIYV 428