Jatropha Genome Database
- JcCA0312321.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0312321.20 - phase: 0
(144 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37860.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 67 4e-12
AT2G22720.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 47 4e-06
AT2G22720.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 47 5e-06
AT2G22720.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 46 7e-06
>AT4G37860.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G22720.3); Has 543 Blast hits to 488 proteins
in 97 species: Archae - 0; Bacteria - 20; Metazoa - 186;
Fungi - 63; Plants - 52; Viruses - 1; Other Eukaryotes -
221 (source: NCBI BLink). | chr4:17800589-17801907
REVERSE
Length = 354
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 63 NEGQKAIMMVKEVFNTKRFIGRDDA--DIVMETNFEEINNEEKRSERLGREEDKEQLRLI 120
+E A+ MV+++ T RF GRD+ D ME NF++I EEKRSERL ++ED EQLRL+
Sbjct: 257 SEDDLALQMVRKMCKTDRFAGRDEDYDDRCMEANFDDIMREEKRSERLAKKEDAEQLRLV 316
Query: 121 EEEAVRERTRKLKRQR 136
EEE ER R+ K+Q+
Sbjct: 317 EEE---ERVRRQKKQK 329
>AT2G22720.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G37860.1); Has 18810 Blast hits to 9739
proteins in 609 species: Archae - 9; Bacteria - 1424;
Metazoa - 8282; Fungi - 2696; Plants - 486; Viruses -
222; Other Eukaryotes - 5691 (source: NCBI BLink). |
chr2:9659235-9660532 FORWARD
Length = 340
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 63 NEGQKAIMMVKEVFNTKRFIGRDDADIVMETNFEEINNEEKRSERLGR 110
+E Q+A M++++ KRF DD DI ME FE+I EE+RS R+ R
Sbjct: 266 SEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAR 313
>AT2G22720.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Chromatin SPT2
(InterPro:IPR013256); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G37860.1); Has 34349
Blast hits to 21327 proteins in 952 species: Archae - 9;
Bacteria - 3053; Metazoa - 16365; Fungi - 6337; Plants -
1046; Viruses - 325; Other Eukaryotes - 7214 (source:
NCBI BLink). | chr2:9658182-9660532 FORWARD
Length = 569
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 63 NEGQKAIMMVKEVFNTKRFIGRDDADIVMETNFEEINNEEKRSERLGR 110
+E Q+A M++++ KRF DD DI ME FE+I EE+RS R+ R
Sbjct: 495 SEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAR 542
>AT2G22720.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Chromatin SPT2
(InterPro:IPR013256); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G37860.1); Has 34422
Blast hits to 21553 proteins in 958 species: Archae - 9;
Bacteria - 2953; Metazoa - 16492; Fungi - 6405; Plants -
1061; Viruses - 320; Other Eukaryotes - 7182 (source:
NCBI BLink). | chr2:9657344-9660532 FORWARD
Length = 672
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 63 NEGQKAIMMVKEVFNTKRFIGRDDADIVMETNFEEINNEEKRSERLGR 110
+E Q+A M++++ KRF DD DI ME FE+I EE+RS R+ R
Sbjct: 598 SEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAR 645