Jatropha Genome Database

JcCA0312091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312091.20 + phase: 0 /partial
         (120 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56330.1 | Symbols:  | N2,N2-dimethylguanosine tRNA methyltra...   127   2e-30

>AT3G56330.1 | Symbols:  | N2,N2-dimethylguanosine tRNA
           methyltransferase family protein |
           chr3:20890250-20891933 FORWARD
          Length = 433

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 85/118 (72%), Gaps = 12/118 (10%)

Query: 1   MLILIPKTLSSSPFLLQNPLNVRNFEVRNPKVNKFN---CKF-------ELQTERGIVFE 50
           +L L PKTLSSS F   +    +N + ++P   +F    C F       E+Q ER + FE
Sbjct: 2   LLTLSPKTLSSSSFFTVH--KSQNPKCKSPDSCRFKSLKCSFDRILVKSEVQIERNLEFE 59

Query: 51  TGGTFFQHESAKGRDLGVLAASLYKQSKGNLRVLDAMCGCGIRSCRYLIEAKADFVLA 108
           TG TFF+HESA+GRDLGVL+A+LYK+S G+LRVLDAMCGCGIRS RYL+EA+ADFV+A
Sbjct: 60  TGETFFRHESARGRDLGVLSATLYKRSNGSLRVLDAMCGCGIRSLRYLVEAEADFVMA 117