Jatropha Genome Database

JcCA0312091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312091.10 - phase: 0 /partial
         (145 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56320.1 | Symbols:  | nucleotidyltransferase family protein ...   110   4e-25
AT3G51620.2 | Symbols:  | unknown protein | chr3:19143859-191479...    96   6e-21
AT3G51620.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    96   6e-21
AT2G40520.4 | Symbols:  | nucleotidyltransferase family protein ...    89   8e-19
AT2G40520.3 | Symbols:  | nucleotidyltransferase family protein ...    89   8e-19
AT2G40520.2 | Symbols:  | nucleotidyltransferase family protein ...    89   8e-19
AT2G40520.1 | Symbols:  | nucleotidyltransferase family protein ...    89   8e-19
AT3G61690.1 | Symbols:  | unknown protein | chr3:22828349-228334...    83   7e-17

>AT3G56320.1 | Symbols:  | nucleotidyltransferase family protein |
           chr3:20886193-20888624 REVERSE
          Length = 603

 Score =  110 bits (274), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/117 (46%), Positives = 73/117 (62%)

Query: 26  LSIDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLK 85
           L ID + W++A            P L S++ R E+IDY+R LI  +   EVF  GSVPLK
Sbjct: 33  LPIDADSWMIAEERAHEILCTIQPALVSDRSRNEIIDYVRTLIMSHEGIEVFSFGSVPLK 92

Query: 86  TYLPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSEVKDVQYIQAQVKILDFN 142
           TYLPDGDIDLTVL+ QNM++D   ++ + L+ EE+       DVQ+I AQVK++  N
Sbjct: 93  TYLPDGDIDLTVLTKQNMDDDFYGQLCSRLQNEERESEFHATDVQFIPAQVKVIKCN 149


>AT3G51620.2 | Symbols:  | unknown protein | chr3:19143859-19147944
           FORWARD
          Length = 829

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 2/112 (1%)

Query: 30  PELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTYLP 89
           PELW+              PTL SE +R++VI Y+++LI+     EV   GSVPLKTYLP
Sbjct: 31  PELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLP 90

Query: 90  DGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSE--VKDVQYIQAQVKIL 139
           DGDIDLT       EE+LA +V+ +L+ EE +  S+  VKDVQ I+A+VK++
Sbjct: 91  DGDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLV 142


>AT3G51620.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; BEST
           Arabidopsis thaliana protein match is:
           nucleotidyltransferase family protein
           (TAIR:AT3G56320.1); Has 160 Blast hits to 133 proteins
           in 36 species: Archae - 0; Bacteria - 0; Metazoa - 19;
           Fungi - 21; Plants - 98; Viruses - 0; Other Eukaryotes -
           22 (source: NCBI BLink). | chr3:19143859-19147891
           FORWARD
          Length = 755

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 2/112 (1%)

Query: 30  PELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTYLP 89
           PELW+              PTL SE +R++VI Y+++LI+     EV   GSVPLKTYLP
Sbjct: 31  PELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLP 90

Query: 90  DGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSE--VKDVQYIQAQVKIL 139
           DGDIDLT       EE+LA +V+ +L+ EE +  S+  VKDVQ I+A+VK++
Sbjct: 91  DGDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLV 142


>AT2G40520.4 | Symbols:  | nucleotidyltransferase family protein |
           chr2:16923541-16925675 FORWARD
          Length = 502

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 68/112 (60%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           I+ E+WL+A            P   +E+ R ++I  ++ L+      EV+  GS+PLKTY
Sbjct: 28  IEAEVWLIAEARAQEILCAIQPNYLAERSRNKIISNLQTLLWERLGIEVYLFGSMPLKTY 87

Query: 88  LPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSEVKDVQYIQAQVKIL 139
           LPDGDIDLTVL++   EED AR V  +L+ E  +   +V  VQY+QA+VK++
Sbjct: 88  LPDGDIDLTVLTHHASEEDCARAVCCVLEAEMGNSDLQVTGVQYVQAKVKVI 139


>AT2G40520.3 | Symbols:  | nucleotidyltransferase family protein |
           chr2:16923541-16925675 FORWARD
          Length = 502

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 68/112 (60%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           I+ E+WL+A            P   +E+ R ++I  ++ L+      EV+  GS+PLKTY
Sbjct: 28  IEAEVWLIAEARAQEILCAIQPNYLAERSRNKIISNLQTLLWERLGIEVYLFGSMPLKTY 87

Query: 88  LPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSEVKDVQYIQAQVKIL 139
           LPDGDIDLTVL++   EED AR V  +L+ E  +   +V  VQY+QA+VK++
Sbjct: 88  LPDGDIDLTVLTHHASEEDCARAVCCVLEAEMGNSDLQVTGVQYVQAKVKVI 139


>AT2G40520.2 | Symbols:  | nucleotidyltransferase family protein |
           chr2:16923541-16925675 FORWARD
          Length = 502

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 68/112 (60%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           I+ E+WL+A            P   +E+ R ++I  ++ L+      EV+  GS+PLKTY
Sbjct: 28  IEAEVWLIAEARAQEILCAIQPNYLAERSRNKIISNLQTLLWERLGIEVYLFGSMPLKTY 87

Query: 88  LPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSEVKDVQYIQAQVKIL 139
           LPDGDIDLTVL++   EED AR V  +L+ E  +   +V  VQY+QA+VK++
Sbjct: 88  LPDGDIDLTVLTHHASEEDCARAVCCVLEAEMGNSDLQVTGVQYVQAKVKVI 139


>AT2G40520.1 | Symbols:  | nucleotidyltransferase family protein |
           chr2:16923541-16925675 FORWARD
          Length = 502

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 68/112 (60%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           I+ E+WL+A            P   +E+ R ++I  ++ L+      EV+  GS+PLKTY
Sbjct: 28  IEAEVWLIAEARAQEILCAIQPNYLAERSRNKIISNLQTLLWERLGIEVYLFGSMPLKTY 87

Query: 88  LPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSEVKDVQYIQAQVKIL 139
           LPDGDIDLTVL++   EED AR V  +L+ E  +   +V  VQY+QA+VK++
Sbjct: 88  LPDGDIDLTVLTHHASEEDCARAVCCVLEAEMGNSDLQVTGVQYVQAKVKVI 139


>AT3G61690.1 | Symbols:  | unknown protein | chr3:22828349-22833477
           FORWARD
          Length = 1303

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 4/116 (3%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLI-KGYYATEVFPSGSVPLKT 86
           +D E W  A            P   SE +R  V  Y+RRLI + +   ++F  GSVPLKT
Sbjct: 34  LDAERWAKAEDRTAKLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFMFGSVPLKT 93

Query: 87  YLPDGDIDLTVLSY-QNMEEDLAREVYNMLKYEEQHPMS--EVKDVQYIQAQVKIL 139
           YLPDGDIDLT  S  QN+++  A  V +ML+ EE++  +   VK+VQYIQA+VKI+
Sbjct: 94  YLPDGDIDLTAFSANQNLKDSWANLVRDMLEKEEKNENAEFHVKEVQYIQAEVKII 149