Jatropha Genome Database

JcCA0311881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311881.10 + phase: 2 /partial/short
         (44 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19240.1 | Symbols:  | unknown protein | chr1:6649562-6650384...    74   2e-14

>AT1G19240.1 | Symbols:  | unknown protein | chr1:6649562-6650384
           REVERSE
          Length = 104

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 39/42 (92%)

Query: 3   VSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRLKDD 44
           VS+WTCSK+  +FFVAGVFVGYTLK RV+RWASKLL+R+KDD
Sbjct: 63  VSVWTCSKLCAVFFVAGVFVGYTLKRRVRRWASKLLRRIKDD 104