Jatropha Genome Database

JcCA0311741.20

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311741.20 - phase: 0 
         (236 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24750.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   386   e-108
AT3G08920.1 | Symbols:  | rhodanese-like domain-containing prote...   109   1e-24
AT2G42220.1 | Symbols:  | rhodanese-like domain-containing prote...    85   5e-17
AT4G27700.1 | Symbols:  | rhodanese-like domain-containing prote...    49   2e-06

>AT4G24750.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST
           Arabidopsis thaliana protein match is: rhodanese-like
           domain-containing protein (TAIR:AT3G08920.1); Has 222
           Blast hits to 222 proteins in 59 species: Archae - 8;
           Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 88;
           Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
           | chr4:12758422-12760749 REVERSE
          Length = 292

 Score =  386 bits (991), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/236 (76%), Positives = 207/236 (87%)

Query: 1   MQTGDEDYDLKQMRDMAAAKRRWDAMIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQ 60
           MQ  DED DLKQMRD+AAAK+RWD ++REGKV +LTPREAGYAI LS+K LLDVRPS E+
Sbjct: 57  MQAVDEDIDLKQMRDIAAAKKRWDGLLREGKVKLLTPREAGYAISLSNKPLLDVRPSSER 116

Query: 61  KKAWVKGSTWIPIFEVDDRSDIGTLSKKFTNFMMGGWWSGVPTLTYDNQFLSKVEEKFPK 120
            KAW+KGSTW+PIF+ DD  D GTLSKK T+F MGGWWSG PTL+++  FLSKVEEKFPK
Sbjct: 117 NKAWIKGSTWVPIFDNDDNLDAGTLSKKVTSFAMGGWWSGAPTLSFNRLFLSKVEEKFPK 176

Query: 121 DTDLIVACQRGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVIEGPQPLKFAGIGGV 180
           D++LIVACQ+GLRSLAACELLYNAGY NLFWVQGGLE+A++EDLV EG QPLK AGIGG 
Sbjct: 177 DSELIVACQKGLRSLAACELLYNAGYENLFWVQGGLESAQDEDLVTEGVQPLKLAGIGGF 236

Query: 181 SEFLGWTDQQRAAAAKEGWGYRLLFSARLIGVFLVADALFLGAQQVGRYIQDIRSH 236
           SEFLGWTDQQRA AAKEGWGYRL+++ARL GV L ADALF+GAQQ+G YIQ++R H
Sbjct: 237 SEFLGWTDQQRAQAAKEGWGYRLVYTARLFGVVLAADALFVGAQQLGHYIQELRGH 292


>AT3G08920.1 | Symbols:  | rhodanese-like domain-containing protein
           | chr3:2712274-2713117 FORWARD
          Length = 214

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 26  MIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVDDRSDIGTL 85
           +I  GKV  + P+EA   +     ILLDVRP+ E++KA VKGS  +P+F  D  +   TL
Sbjct: 39  LILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPITL 98

Query: 86  SKKFTNFMMGGWWSGVPTLTYDNQFLSKVEEKFP-KDTDLIVACQRGLRSLAACELLYNA 144
            KK+ +    G W+G      +++F  +V E  P K++ ++V C  GLRSLAA   L+  
Sbjct: 99  LKKWIHLGYIGLWTGQRFTMINDEFALRVVEAVPDKESKVLVVCGEGLRSLAAVSKLHGE 158

Query: 145 GYRNLFWVQGGLEAAEEEDLV-IEGPQPLKFAGIGGVS 181
           GY++L W+ GG     E D   IEG + L+FA IGGVS
Sbjct: 159 GYKSLGWLTGGFNRVSEGDFPEIEGTEELRFATIGGVS 196


>AT2G42220.1 | Symbols:  | rhodanese-like domain-containing protein
           | chr2:17592105-17593305 FORWARD
          Length = 234

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 39  EAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVDDRSDIGTLSKKFTNFMMGGWW 98
           E GY++       +DVR   + ++A +K  + IP+F  ++ +DIGT+ K+  +    G +
Sbjct: 63  EEGYSV-------VDVRDKTQFERAHIKSCSHIPLFIYNEDNDIGTIIKRTVHNNFSGLF 115

Query: 99  SGVPTLTYDNQFLSKVEEKFPKDTDLIVACQRGLRSLAACELLYNAGYRNLFWVQGGLEA 158
            G+P    + +FL  V  +F +D+ L++ CQ GLRS AA   L  AGY N+  V  GL++
Sbjct: 116 FGLPFTKVNPEFLKSVRNEFSQDSKLLLVCQEGLRSAAAASRLEEAGYENIACVTSGLQS 175

Query: 159 AEEEDLVIEGPQPLKFAGIGGV 180
            +       G   L+ AG  G+
Sbjct: 176 VKPGTFESVGSTELQNAGKAGL 197


>AT4G27700.1 | Symbols:  | rhodanese-like domain-containing protein
           | chr4:13826541-13827673 REVERSE
          Length = 224

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 20/162 (12%)

Query: 21  RRWDAMIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVDDRS 80
           R+   ++ E +V  +  +EA    + ++ ++LDVRP  E K     G+  + ++ +    
Sbjct: 63  RQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIREW 122

Query: 81  DIGTLSKKFTNFMMGGWWSGVPTLTYDN-QFLSKVEEKFPKDTDLIVACQRG-------- 131
               ++++   F   G +SG    T +N +F+  VE K  K+  +IVAC           
Sbjct: 123 TAWDIARRL-GFAFFGIFSG----TEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQN 177

Query: 132 ------LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVIE 167
                  RSL A  LL   GY+N+F ++GG+    +E L +E
Sbjct: 178 LPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLPVE 219