Jatropha Genome Database

JcCA0311501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.20 + phase: 0 
         (341 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63410.1 | Symbols: APG1, VTE3, IEP37, E37 | APG1 (ALBINO OR ...   520   e-148

>AT3G63410.1 | Symbols: APG1, VTE3, IEP37, E37 | APG1 (ALBINO OR
           PALE GREEN MUTANT 1); 2-methyl-6-phytyl-1,4-benzoquinone
           methyltransferase/ S-adenosylmethionine-dependent
           methyltransferase/ methyltransferase |
           chr3:23415816-23417002 REVERSE
          Length = 338

 Score =  520 bits (1340), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/345 (75%), Positives = 285/345 (82%), Gaps = 11/345 (3%)

Query: 1   MASSMINGAENLTLARGITQKGLGFSGSDFHGKYFPRVNLVSSARIFKATRIVTPKCSLS 60
           MAS M+NGA           KGLG  GS+ H +  PR  L+S  R       V  +CS S
Sbjct: 1   MASLMLNGAITFP-------KGLGSPGSNLHARSIPRPTLLSVTRTSTPRLSVATRCSSS 53

Query: 61  ASRPA---SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNML 117
           +   +   +QPRFIQHKKEA+WFYRFLSIVYDHVINPGHWTEDMRDDALEPADL++ +M 
Sbjct: 54  SVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHPDMR 113

Query: 118 VVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPT 177
           VVDV          IVK V AKNVTILDQSPHQLAKAKQKEPLK+CKI+EGDAEDLPFPT
Sbjct: 114 VVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173

Query: 178 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 237
           DYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKACLIGPVYPTFWLSRFF+DVWMLFPK
Sbjct: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKIGGKACLIGPVYPTFWLSRFFSDVWMLFPK 233

Query: 238 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED 297
           EEEYIEWF+ AGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED
Sbjct: 234 EEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED 293

Query: 298 VSKPV-HPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRPI 341
           V KPV +PF FL RF+LG LAA ++VL+PIYMW+KDQIVPK +PI
Sbjct: 294 VEKPVNNPFSFLGRFLLGTLAAAWFVLIPIYMWIKDQIVPKDQPI 338