Jatropha Genome Database

JcCA0311501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.10 - phase: 0 /partial
         (215 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38290.1 | Symbols: ATAMT2, AMT2;1 | ATAMT2 (AMMONIUM TRANSPO...   233   8e-62
AT2G38290.2 | Symbols: ATAMT2, AMT2;1 | ATAMT2 (AMMONIUM TRANSPO...   110   8e-25

>AT2G38290.1 | Symbols: ATAMT2, AMT2;1 | ATAMT2 (AMMONIUM
           TRANSPORTER 2); ammonium transmembrane transporter/ high
           affinity secondary active ammonium transmembrane
           transporter | chr2:16039672-16042291 REVERSE
          Length = 475

 Score =  233 bits (593), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 126/182 (69%), Positives = 142/182 (78%), Gaps = 9/182 (4%)

Query: 18  PEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVG 77
           PEW+NK DNAWQLTAATLVGLQS+PGLVILY SIVKKKWAVNSAFMALYAFAAVL+CWV 
Sbjct: 13  PEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVL 72

Query: 78  WGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQG-------FAGKFPSATMVYFQFVFAAIT 130
             Y+M+FG  +  PF GK G + DQ +L  Q         A  FP AT+VYFQF FAAIT
Sbjct: 73  LCYKMAFG-EELLPFWGKGGPAFDQGYLKGQAKIPNSNVAAPYFPMATLVYFQFTFAAIT 131

Query: 131 LILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGGYVIHLA 190
            ILVAG++LGRMN  AWM FVPLWL FSYT+ AYSIW   G+L + G+IDYSGGYVIHL+
Sbjct: 132 TILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWG-GGFLYQWGVIDYSGGYVIHLS 190

Query: 191 SG 192
           SG
Sbjct: 191 SG 192


>AT2G38290.2 | Symbols: ATAMT2, AMT2;1 | ATAMT2 (AMMONIUM
           TRANSPORTER 2); ammonium transmembrane transporter/ high
           affinity secondary active ammonium transmembrane
           transporter | chr2:16039672-16041864 REVERSE
          Length = 359

 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 117 ATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKM 176
           AT+VYFQF FAAIT ILVAG++LGRMN  AWM FVPLWL FSYT+ AYSIW   G+L + 
Sbjct: 2   ATLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWG-GGFLYQW 60

Query: 177 GIIDYSGGYVIHLASG 192
           G+IDYSGGYVIHL+SG
Sbjct: 61  GVIDYSGGYVIHLSSG 76