Jatropha Genome Database

JcCA0311471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.20 - phase: 0 
         (298 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41350.1 | Symbols:  | unknown protein | chr2:17231565-172334...   478   e-135
AT2G41350.2 | Symbols:  | unknown protein | chr2:17231565-172334...   473   e-134
AT2G21980.1 | Symbols:  | unknown protein | chr2:9358882-9359061...    91   6e-19

>AT2G41350.1 | Symbols:  | unknown protein | chr2:17231565-17233458
           FORWARD
          Length = 298

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/298 (77%), Positives = 259/298 (86%), Gaps = 1/298 (0%)

Query: 1   MSDIISGVDTPVTEAKSGSDGAKVAEVKTWLASQFDAAGKEVPEFEYTSRSIAHLYNLAS 60
           MSD+ +G    V+EAK GSD A+++EVK WL SQF+A GKEVP FEYT RSI HLYNLA+
Sbjct: 1   MSDV-TGDLAAVSEAKGGSDAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLAT 59

Query: 61  VSQAKTQAANILANDFRLKATEYRAQAARIREILEGVELAQEGLPSNVVGSAQVLANVAN 120
            SQAK+QAA I+ANDFRLKA+EYRAQAARIREILE   ++QE LPSNVV SAQVLANVAN
Sbjct: 60  ASQAKSQAATIVANDFRLKASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVAN 119

Query: 121 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESKILLDYTRKAIARLTYLKRTLAQ 180
           LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKES  LLDYTRKAI RLTYLK+ LAQ
Sbjct: 120 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQ 179

Query: 181 LEDDVAPSEAQMENWKTNLAIMASKERQYLQQYSNYKAVLNRVGYTPEISHGVLVEMAEH 240
           LEDDV P E+QMENWKTNL +MA KE QY+QQY  Y+ +LNRVGYTP+ISH  LVEMAEH
Sbjct: 180 LEDDVVPCESQMENWKTNLEVMAVKEEQYIQQYKKYEMLLNRVGYTPKISHRELVEMAEH 239

Query: 241 RKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSALATSD 298
           RKEL+K TKP++D LRSY+DLPPDK LAALAIEDKKRQ+ AAEKYLE+VLQSAL T+D
Sbjct: 240 RKELDKMTKPVLDTLRSYQDLPPDKALAALAIEDKKRQFTAAEKYLEEVLQSALETND 297


>AT2G41350.2 | Symbols:  | unknown protein | chr2:17231565-17233458
           FORWARD
          Length = 299

 Score =  473 bits (1218), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/299 (77%), Positives = 259/299 (86%), Gaps = 2/299 (0%)

Query: 1   MSDIISGVDTPVTEAKSGSDGAKVAEVKTWLASQFDAAGKEVPEFEYTSRSIAHLYNLAS 60
           MSD+ +G    V+EAK GSD A+++EVK WL SQF+A GKEVP FEYT RSI HLYNLA+
Sbjct: 1   MSDV-TGDLAAVSEAKGGSDAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLAT 59

Query: 61  VSQAKTQAANILANDFRLKATEYRAQAARIREILEGVELAQEGLPSNVVGSAQVLANVAN 120
            SQAK+QAA I+ANDFRLKA+EYRAQAARIREILE   ++QE LPSNVV SAQVLANVAN
Sbjct: 60  ASQAKSQAATIVANDFRLKASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVAN 119

Query: 121 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESKILLDYTRKAIARLTYLKRTLAQ 180
           LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKES  LLDYTRKAI RLTYLK+ LAQ
Sbjct: 120 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQ 179

Query: 181 LEDDVAPSEAQMENWKTNLAIMASKERQYLQQYSNY-KAVLNRVGYTPEISHGVLVEMAE 239
           LEDDV P E+QMENWKTNL +MA KE QY+QQY  Y + +LNRVGYTP+ISH  LVEMAE
Sbjct: 180 LEDDVVPCESQMENWKTNLEVMAVKEEQYIQQYKKYEQMLLNRVGYTPKISHRELVEMAE 239

Query: 240 HRKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSALATSD 298
           HRKEL+K TKP++D LRSY+DLPPDK LAALAIEDKKRQ+ AAEKYLE+VLQSAL T+D
Sbjct: 240 HRKELDKMTKPVLDTLRSYQDLPPDKALAALAIEDKKRQFTAAEKYLEEVLQSALETND 298


>AT2G21980.1 | Symbols:  | unknown protein | chr2:9358882-9359061
           REVERSE
          Length = 59

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 49/58 (84%)

Query: 237 MAEHRKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSAL 294
           MAEH  ELEK TKP++DALRSY+DLPPDK LA L  EDKKRQY AAEK LE+VLQSAL
Sbjct: 1   MAEHLTELEKMTKPVLDALRSYQDLPPDKALATLEFEDKKRQYEAAEKRLEEVLQSAL 58