Jatropha Genome Database

JcCA0311471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.10 - phase: 0 /pseudo/partial
         (311 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51560.1 | Symbols:  | FMN binding | chr1:19119900-19121859 R...   270   6e-73
AT3G21140.1 | Symbols:  | FMN binding | chr3:7409696-7412086 REV...   249   2e-66
AT3G03890.1 | Symbols:  | FMN binding | chr3:999667-1001996 REVERSE    74   1e-13
AT3G03890.2 | Symbols:  | FMN binding | chr3:999837-1001996 REVERSE    73   2e-13

>AT1G51560.1 | Symbols:  | FMN binding | chr1:19119900-19121859
           REVERSE
          Length = 392

 Score =  270 bits (691), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 135/144 (93%), Gaps = 3/144 (2%)

Query: 108 EKDAEKIVKFETPLAV---GGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARF 164
           EKD+E I+  ET LAV   GGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARF
Sbjct: 101 EKDSENIIDVETSLAVPHGGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARF 160

Query: 165 AHLCTVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIP 224
           AHLCTVMS+MHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRN+LA+PRCTLVVQIP
Sbjct: 161 AHLCTVMSKMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNILAEPRCTLVVQIP 220

Query: 225 GWSGLSNARVTIFGDVFPLPENQQ 248
           GWS LSNARVT+FGDV+PLPE QQ
Sbjct: 221 GWSCLSNARVTLFGDVYPLPEEQQ 244


>AT3G21140.1 | Symbols:  | FMN binding | chr3:7409696-7412086
           REVERSE
          Length = 387

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 142/187 (75%), Gaps = 4/187 (2%)

Query: 66  GLRTRALARELSGGEGEDHRPLDNGXXXXXXXXXXXXXQDNNEKDAEKIVKFETPLA--- 122
           GLR +AL R  +  EGED+                    ++N + +  ++  E  LA   
Sbjct: 54  GLRIQALLRNETPSEGEDNNGFGFFPGDIFSLSQEKLGSNSNGETSHSVIDVEASLAHPQ 113

Query: 123 -VGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGY 181
             GG RAGLFRTPISGGVQ+ATSAH LPRPALAVRNL+EQARFAHLCTVMS+MHHRREGY
Sbjct: 114 GGGGNRAGLFRTPISGGVQNATSAHALPRPALAVRNLLEQARFAHLCTVMSKMHHRREGY 173

Query: 182 PFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVF 241
           PFGSLVDFAPD MGHPIF FSPLAIHTRNLL +PRC+LVVQIPGWSGLSNARVT+FGDV+
Sbjct: 174 PFGSLVDFAPDRMGHPIFLFSPLAIHTRNLLNEPRCSLVVQIPGWSGLSNARVTLFGDVY 233

Query: 242 PLPENQQ 248
           PL E++Q
Sbjct: 234 PLSEDEQ 240


>AT3G03890.1 | Symbols:  | FMN binding | chr3:999667-1001996 REVERSE
          Length = 321

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 167 LCTVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVV--QIP 224
           +C ++S    + EGYP GS+VDFA D  G PI + S LA+HT++LLA+P+C+L++     
Sbjct: 95  ICGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLIARDPE 154

Query: 225 GWSGLSNARVTIFGDVFPLPENQQVVI 251
             +GL   R+T+ GD   + E  Q  +
Sbjct: 155 DRTGL---RITLHGDAVLVSEKDQAAV 178


>AT3G03890.2 | Symbols:  | FMN binding | chr3:999837-1001996 REVERSE
          Length = 305

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 167 LCTVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVV--QIP 224
           +C ++S    + EGYP GS+VDFA D  G PI + S LA+HT++LLA+P+C+L++     
Sbjct: 95  ICGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLIARDPE 154

Query: 225 GWSGLSNARVTIFGDVFPLPENQQVVI 251
             +GL   R+T+ GD   + E  Q  +
Sbjct: 155 DRTGL---RITLHGDAVLVSEKDQAAV 178