Jatropha Genome Database

JcCA0311161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.10 + phase: 0 
         (272 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05625.1 | Symbols:  | binding | chr3:1632408-1633912 FORWARD      352   2e-97

>AT3G05625.1 | Symbols:  | binding | chr3:1632408-1633912 FORWARD
          Length = 257

 Score =  352 bits (903), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/237 (71%), Positives = 199/237 (83%), Gaps = 5/237 (2%)

Query: 34  TDLSFFSTIPSSIHNLQRPLPILSRRVFLPSVSGIWDALTGGGGNNPRQAVLKIRRGMSL 93
           T +S F T+  S    + P   LSRR+FLPSVS IWDA+TGGG +NPR+A+  +RRGM L
Sbjct: 22  TAISPFKTL--SPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQL 79

Query: 94  FREGDVLGSLAEFDKAIELDSRQKACRFDLWQRGLSLYYLDRFEEGAKQFRLDVAQNPND 153
           FR+GDV GS+AEFD+AI LD RQKA    LWQRGLSLYY+DRFEEGA+QFR+DVAQNPND
Sbjct: 80  FRQGDVAGSVAEFDRAIILDPRQKAY---LWQRGLSLYYVDRFEEGAEQFRIDVAQNPND 136

Query: 154 TEESIWCFLCEAQLYGVDEARKRFLEVGRDPRPVMREAYNMFKDGGDPEKLVTAFSNGSE 213
           TEESIWCF+CEA+L+GVD AR +FLEVGRD RPVMREAYN+FK+GGDPEKLV  FS+G  
Sbjct: 137 TEESIWCFICEARLHGVDVARTQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQA 196

Query: 214 NEYFYASLYAGLYHESQKKLDAAKFHIVAACKSLYGQRSDDYMAALSKVHCLCRNWS 270
           +EYFYASLYAGLY+E++ K + AKFH+ AAC S YGQRSDDYMA+L+KVHCLCRNWS
Sbjct: 197 SEYFYASLYAGLYYEAEGKSENAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNWS 253