Jatropha Genome Database

JcCA0311061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311061.10 + phase: 0 
         (526 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16690.1 | Symbols: ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION C...   446   e-125

>AT5G16690.1 | Symbols: ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION
           COMPLEX SUBUNIT 3); protein binding |
           chr5:5474410-5479878 FORWARD
          Length = 734

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/526 (45%), Positives = 323/526 (61%), Gaps = 18/526 (3%)

Query: 1   MAQSTAATATDSPHLLAPDVTESNLQPFFVLHEGSSHXXXXXXXXXXXXXXXIDLSPTLT 60
           +A     + TDS    + D  E++++PFFVLH+ SS                I+ SP+  
Sbjct: 7   VADPPQCSTTDS--FNSSDTAENDIRPFFVLHKASSGNHNGKLTGIVKSKRRIE-SPS-P 62

Query: 61  KNGENTETEKVEDSDDHQYLAKRMEAFEAVWSKIESTIKAVLRNLNASSFNEIHQWVCES 120
           K  + +E E VE+ D   +   R + FE VWSKIE TI+ VLRN N+  F+ IH W+ ES
Sbjct: 63  KIAKRSEVESVEEEDGQFFSTLRFKVFETVWSKIEKTIEDVLRNSNSKVFSGIHDWIRES 122

Query: 121 FKTLTSFGTPSFHEATRPFPLVQGVISKQVFTGVVLTKNMEFVDDLLTFEELGLHLKSKG 180
           F+++ S G     EA R +P++    SKQ+ T +VLT+N+E VDDLLTFEEL LHLKS+G
Sbjct: 123 FESIISSGALKLSEAVRSYPVLTQASSKQLLTAMVLTRNLEMVDDLLTFEELELHLKSQG 182

Query: 181 CHVANLSSLDFSVKNGIGGCLRSLLRQLVMVTLDAPDISILATWYREQGNCNNPIVVIID 240
           CHVA LSS+DFS K+G+GGCLR LLRQ VM T+D  D++ILA+WYRE  N  NP+V+I+D
Sbjct: 183 CHVAKLSSMDFSAKSGVGGCLRGLLRQFVMPTVDVADVTILASWYRENKNHENPVVIIVD 242

Query: 241 DLERCCGSVLSDFILMLSEWILKIPVILIMGVATTLDALRNILPSNMIHHLCPCNFILRT 300
           D ERCCG VLSD IL+LSEW +K+P+ LIMGV+T  DA R IL  N +  LC   F L +
Sbjct: 243 DTERCCGPVLSDLILILSEWAIKVPIFLIMGVSTAHDAPRKILSVNALQRLCATRFTLSS 302

Query: 301 PSERMDAIVEAVLVKQCSGFCISHKVAVFLRSYFVCQDGTITSFIKALKIACAQHFSMES 360
           P+ERMDA+++AV +K CSGF +SHKVA+F+RSYF+CQDGT+TSF++ LKIAC QHFS+E 
Sbjct: 303 PAERMDAVLKAVFLKPCSGFTVSHKVALFMRSYFLCQDGTLTSFVRTLKIACLQHFSLEP 362

Query: 361 LSFILPWFXXXXXXXXXXXXNYGLSPEIVLKRAFDLPSCRRNKMAEQNGDILVHGLSELK 420
           LS +L  F               L+ E  +K AFDLPS  RNK+     ++L H L +L+
Sbjct: 363 LSIMLEHFCHDGVNQLSGEGTELLT-EATMKHAFDLPSVTRNKITRSTFEMLPHFLLDLQ 421

Query: 421 KLQKQWSTIVMCLYEVVXXXXXXXXXXXXEALDPELGMLRVSDTHRGLQEDSIVFPTEQD 480
           ++   WS +V+CLYE              E LDPE   L+              F   + 
Sbjct: 422 RMPNPWSIVVLCLYEAGKFDKLRLLDIFCEILDPEARYLK-------------YFSPSEI 468

Query: 481 LQKKYTSLRRGGIISQAMHKVRDLPAMQLWKLLKGWEKHTIDIPQV 526
           +  +  +  R  +I + + K+RDL   QL  +LK WE  T +  ++
Sbjct: 469 VNSQSHNSGRNNVIRRVLRKLRDLSPSQLSSMLKSWENLTAEFTEI 514