Jatropha Genome Database

JcCA0310961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310961.20 + phase: 0 /partial
         (70 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14150.2 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...   105   5e-24
AT3G14150.1 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...   105   5e-24
AT3G14130.1 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...   105   7e-24
AT3G14420.2 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    88   1e-18
AT3G14420.3 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    88   1e-18
AT3G14420.1 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    88   1e-18
AT4G18360.2 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    86   5e-18
AT4G18360.1 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    86   5e-18
AT3G14415.1 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    84   2e-17
AT3G14420.4 | Symbols:  | (S)-2-hydroxy-acid oxidase, peroxisoma...    67   2e-12

>AT3G14150.2 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4690667-4692679 REVERSE
          Length = 363

 Score =  105 bits (263), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 57/65 (87%), Gaps = 1/65 (1%)

Query: 6  VNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDMST 65
          VNV+EFQELAKQALPKMYYD+Y GGAEDQHTL ENV+AF R  +F  R+LVDVS+IDMST
Sbjct: 5  VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAF-RRIMFRPRVLVDVSKIDMST 63

Query: 66 TVLGY 70
           +LGY
Sbjct: 64 KILGY 68


>AT3G14150.1 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4690667-4692679 REVERSE
          Length = 363

 Score =  105 bits (263), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 57/65 (87%), Gaps = 1/65 (1%)

Query: 6  VNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDMST 65
          VNV+EFQELAKQALPKMYYD+Y GGAEDQHTL ENV+AF R  +F  R+LVDVS+IDMST
Sbjct: 5  VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAF-RRIMFRPRVLVDVSKIDMST 63

Query: 66 TVLGY 70
           +LGY
Sbjct: 64 KILGY 68


>AT3G14130.1 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4685844-4687852 REVERSE
          Length = 363

 Score =  105 bits (261), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 57/65 (87%), Gaps = 1/65 (1%)

Query: 6  VNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDMST 65
          VNV+EFQELAKQALPKMYYD+Y GGAEDQHTL ENV+AF R  +F  R+LVDVS IDMST
Sbjct: 5  VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAF-RRIMFRPRVLVDVSNIDMST 63

Query: 66 TVLGY 70
          ++LGY
Sbjct: 64 SMLGY 68


>AT3G14420.2 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4821804-4823899 FORWARD
          Length = 367

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E+  +AKQ LPKM YDYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+IDM
Sbjct: 2  EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARI-LFRPRILIDVSKIDM 60

Query: 64 STTVLGY 70
          +TTVLG+
Sbjct: 61 TTTVLGF 67


>AT3G14420.3 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4821804-4823899 FORWARD
          Length = 367

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E+  +AKQ LPKM YDYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+IDM
Sbjct: 2  EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARI-LFRPRILIDVSKIDM 60

Query: 64 STTVLGY 70
          +TTVLG+
Sbjct: 61 TTTVLGF 67


>AT3G14420.1 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4821804-4823899 FORWARD
          Length = 367

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E+  +AKQ LPKM YDYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+IDM
Sbjct: 2  EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARI-LFRPRILIDVSKIDM 60

Query: 64 STTVLGY 70
          +TTVLG+
Sbjct: 61 TTTVLGF 67


>AT4G18360.2 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr4:10146627-10148386 REVERSE
          Length = 314

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E++++AK+ LPKM YDYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+ID+
Sbjct: 2  EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRI-LFRPRILIDVSKIDV 60

Query: 64 STTVLGY 70
          STTVLG+
Sbjct: 61 STTVLGF 67


>AT4G18360.1 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr4:10146141-10148386 REVERSE
          Length = 368

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E++++AK+ LPKM YDYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+ID+
Sbjct: 2  EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRI-LFRPRILIDVSKIDV 60

Query: 64 STTVLGY 70
          STTVLG+
Sbjct: 61 STTVLGF 67


>AT3G14415.1 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4818667-4820748 FORWARD
          Length = 367

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDM 63
          E  NV E+  +AK  LPKM YDYYA GAEDQ TL+EN  AF R  +F  RIL+DV++IDM
Sbjct: 2  EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARI-LFRPRILIDVNKIDM 60

Query: 64 STTVLGY 70
          +TTVLG+
Sbjct: 61 ATTVLGF 67


>AT3G14420.4 | Symbols:  | (S)-2-hydroxy-acid oxidase,
          peroxisomal, putative / glycolate oxidase, putative /
          short chain alpha-hydroxy acid oxidase, putative |
          chr3:4821861-4823899 FORWARD
          Length = 348

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 22 MYYDYYAGGAEDQHTLKENVEAFCRNHVFDLRILVDVSQIDMSTTVLGY 70
          M YDYYA GAEDQ TL+EN  AF R  +F  RIL+DVS+IDM+TTVLG+
Sbjct: 1  MVYDYYASGAEDQWTLQENRNAFARI-LFRPRILIDVSKIDMTTTVLGF 48