Jatropha Genome Database
- JcCA0310901.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0310901.10 + phase: 0
(244 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46300.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 180 6e-46
AT4G01110.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 131 4e-31
AT1G01453.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 125 3e-29
AT1G01453.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 125 3e-29
AT1G17620.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 60 2e-09
AT2G30505.1 | Symbols: | Expressed protein | chr2:13001121-1300... 53 2e-07
AT1G54540.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 50 1e-06
>AT2G46300.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: male
gametophyte, sepal, flower, pollen tube; EXPRESSED
DURING: L mature pollen stage, M germinated pollen
stage, 4 anthesis; CONTAINS InterPro DOMAIN/s:
Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G01453.1); Has 340 Blast hits to 339 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 2; Plants - 337; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:19008392-19009247 FORWARD
Length = 252
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 156/245 (63%), Gaps = 12/245 (4%)
Query: 10 MNPVLQKPPGYKDPSKPVPRPLP--------RKAV-LPPAFQPRKVRRTCCGRIWCIVYV 60
MNPVLQKPPGY+DP+ P P P RKAV +P +++P+K RR+CC C + +
Sbjct: 6 MNPVLQKPPGYRDPNMSSPPPPPPPIQQQPMRKAVPMPTSYRPKKKRRSCCRFCCCCICI 65
Query: 61 SVAAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRN 120
++ WFDPK P F + SF++ F +A DG L+A VARVE++N
Sbjct: 66 TLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKN 125
Query: 121 PNPRLTYRYGVSEVEITVGK-EQQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGV 179
PN +L + YG + V+++VG +T +G T++ GF Q KN+TS+K+ T VKN ++E G+
Sbjct: 126 PNSKLVFYYGNTAVDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQLVERGL 185
Query: 180 GSRLKSHFKSRSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGGNMPKCTI 239
RL + F+S+ +V+N+ AKT VGLGV G++IGML +++ C G++L ++D + PKC +
Sbjct: 186 AKRLAAKFQSKDLVINVVAKTKVGLGV-GGIKIGMLAVNLRCGGVSLNKLD-TDSPKCIL 243
Query: 240 RTLKW 244
TLKW
Sbjct: 244 NTLKW 248
>AT4G01110.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: hypocotyl,
root; CONTAINS InterPro DOMAIN/s: Harpin-induced 1
(InterPro:IPR010847); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G01453.1); Has 141
Blast hits to 140 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:480176-481056 REVERSE
Length = 261
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 19/252 (7%)
Query: 10 MNPVLQKPPGYKDPSKPVPRPL------------PRKAVLPPAFQPRKVRR-TCCGRIWC 56
+ PVLQKPPGY++ PL P K +P AF P K R+ + C C
Sbjct: 7 LKPVLQKPPGYRELHSQPQTPLGSSSSSSSMLRRPPKHAIPAAFYPTKKRQWSRCRVFCC 66
Query: 57 IVYVSVAAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIATKTDG---TYLNAATV 113
V ++VA ++ P+ P + SF++S F+ + G + L A
Sbjct: 67 CVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQLTAEAT 126
Query: 114 ARVEVRNPNPRLTYRYGVSEVEITVGKEQ-QTELGSTSLAGFIQAKKNTTSLKIATRVKN 172
AR++ RNPN +L Y YG +V ++VG++ +T LGST + GF++ N T + + +VK
Sbjct: 127 ARLDFRNPNGKLRYYYGNVDVAVSVGEDDFETSLGSTKVKGFVEKPGNRTVVIVPIKVKK 186
Query: 173 AVIEDGVGSRLKSHFKSRSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGG 232
++D RL++ KS+ +VV + AKT VGLGV + +I +G+ + C G+ L+ +D
Sbjct: 187 QQVDDPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRR-KIVTVGVTISCGGVRLQTLD-S 244
Query: 233 NMPKCTIRTLKW 244
M KCTI+ LKW
Sbjct: 245 KMSKCTIKMLKW 256
>AT1G01453.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G01110.1); Has 125 Blast hits to 124 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:166853-167798 REVERSE
Length = 267
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 12/252 (4%)
Query: 3 QQVQRQPMNPVLQKPPGYKD----PSKPVPRPLPRKAVLPPAFQPRKVRRTCCGRIWCIV 58
+ +P+ P LQKPPG++D PS P P P +R C
Sbjct: 13 EMAAEKPLQPALQKPPGFRDQQNQPSAPPSGTATLPRRRPRPIHPADKKRRCSFCRVFCC 72
Query: 59 YVSV--AAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIAT-KTDG--TYLNAATV 113
V + A W+ PK P + SFKIS F+ + K+D ++L+A T
Sbjct: 73 CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 132
Query: 114 ARVEVRNPNPRLTYRYGVSEVEITVG-KEQQTELGSTSLAGFIQAKKNTTSLKIATRVKN 172
+ ++ RNPN +LT+ YG ++V + +G K+ +T L ST + GFI+ N T++ + T V+
Sbjct: 133 SVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVRK 192
Query: 173 AVIEDGVGSRLKSHFKSRSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGG 232
++D RL+ KS+ ++V + AKT VGL V +I +G+ + C G+ L+ +D
Sbjct: 193 RQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAV-GSRKIVTVGVSLRCGGVILQTLD-S 250
Query: 233 NMPKCTIRTLKW 244
M +CTI+ LKW
Sbjct: 251 KMAQCTIKMLKW 262
>AT1G01453.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G01110.1); Has 125 Blast hits to 124 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:166929-167798 REVERSE
Length = 289
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 12/252 (4%)
Query: 3 QQVQRQPMNPVLQKPPGYKD----PSKPVPRPLPRKAVLPPAFQPRKVRRTCCGRIWCIV 58
+ +P+ P LQKPPG++D PS P P P +R C
Sbjct: 13 EMAAEKPLQPALQKPPGFRDQQNQPSAPPSGTATLPRRRPRPIHPADKKRRCSFCRVFCC 72
Query: 59 YVSV--AAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIAT-KTDG--TYLNAATV 113
V + A W+ PK P + SFKIS F+ + K+D ++L+A T
Sbjct: 73 CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 132
Query: 114 ARVEVRNPNPRLTYRYGVSEVEITVG-KEQQTELGSTSLAGFIQAKKNTTSLKIATRVKN 172
+ ++ RNPN +LT+ YG ++V + +G K+ +T L ST + GFI+ N T++ + T V+
Sbjct: 133 SVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVRK 192
Query: 173 AVIEDGVGSRLKSHFKSRSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGG 232
++D RL+ KS+ ++V + AKT VGL V +I +G+ + C G+ L+ +D
Sbjct: 193 RQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAV-GSRKIVTVGVSLRCGGVILQTLD-S 250
Query: 233 NMPKCTIRTLKW 244
M +CTI+ LKW
Sbjct: 251 KMAQCTIKMLKW 262
>AT1G17620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G11890.1); Has 539 Blast hits to 538 proteins
in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:6062313-6063107 FORWARD
Length = 264
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 80 FDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEI--- 136
+ P+ P+F V KIST + T L A V RNPN + + Y V+++ +
Sbjct: 87 YRPQRPSFTVSELKISTLNF---TSAVRLTTAISLSVIARNPNKNVGFIYDVTDITLYKA 143
Query: 137 TVGKEQQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKSRSMV--- 193
+ G + +G ++A F KKNTT+L+ +++ +LK K++ V
Sbjct: 144 STGGDDDVVIGKGTIAAFSHGKKNTTTLRSTIGSPPDELDEISAGKLKGDLKAKKAVAIK 203
Query: 194 VNLRAKTTVGLGVMKGLEIGMLGLDVLCDGI 224
+ L +K V +G +K + G+ V C+GI
Sbjct: 204 IVLNSKVKVKMGALKTPK---SGIRVTCEGI 231
>AT2G30505.1 | Symbols: | Expressed protein |
chr2:13001121-13002086 REVERSE
Length = 321
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 85 PAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEITVGKEQQT 144
P V + K S DIA + +NA +++ N N + Y + +I+ +
Sbjct: 167 PQVLVTNLKFSRLDIAKSSTDLLMNANLNTVLQLSNNNDKTVLYYSPMKADIS---SENI 223
Query: 145 ELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKSRSMVVN--LRAKTTV 202
LG +L+GF Q N TSLKI TR++ + + D + L + K+ +V+ LR K +V
Sbjct: 224 NLGKKTLSGFKQDPGNVTSLKILTRLRKSKVYDVDATLLTNKEKTLEALVDVFLRGKLSV 283
Query: 203 G-LGVMKGLEIGMLGLDVLCDGITLKEIDGGNMPKCTIRTL 242
LG + I + C+ + ++ G P C +R
Sbjct: 284 DWLGFKVHIPIV-----IACESVKQSDVINGLKPACDVRIF 319
>AT1G54540.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: hypocotyl,
flower, root; EXPRESSED DURING: petal differentiation
and expansion stage; CONTAINS InterPro DOMAIN/s:
Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis
thaliana protein match is: harpin-induced
protein-related / HIN1-related / harpin-responsive
protein-related (TAIR:AT1G65690.1); Has 612 Blast hits
to 611 proteins in 22 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr1:20367702-20368421 REVERSE
Length = 239
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 11/166 (6%)
Query: 6 QRQPMNPVLQKPPGYKDPSKPVPRP---LPRKAVLPPAFQPRKVRRTCCGRIWCIVYVSV 62
+Q ++PVLQ + P P LP + +PP P K R CC +I+C V +
Sbjct: 3 DQQKIHPVLQMEANKTKTTTPAPGKTVLLPVQRPIPPPVIPSKNRNMCC-KIFCWVLSLL 61
Query: 63 AAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPN 122
F PK P++ V S +++ I L+A + RNPN
Sbjct: 62 VIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLS---LSAEFKVEITARNPN 118
Query: 123 PRLTYRYGVSEVEITVGK-EQQTELGSTSLAGFIQAKKNTTSLKIA 167
++ Y E +G +T+L + F Q +N T L +A
Sbjct: 119 EKIGIYY---EKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVA 161