Jatropha Genome Database

JcCA0310831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310831.20 - phase: 0 
         (569 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21300.1 | Symbols:  | RNA methyltransferase family protein |...   805   0.0  
AT2G28450.1 | Symbols:  | zinc finger (CCCH-type) family protein...    82   1e-15

>AT3G21300.1 | Symbols:  | RNA methyltransferase family protein |
           chr3:7493654-7496257 REVERSE
          Length = 554

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/495 (77%), Positives = 439/495 (88%), Gaps = 1/495 (0%)

Query: 75  NNNSNSFFPKRGQTLELVCESLAFKGKGVCKVPDTGFVLMCDRALPGERFIGRVTRRKGS 134
           N  +  ++PKRG+T+ELVCESL FKGKG+CKV  TG+V+MCDRALPGERF+GRVTRRKGS
Sbjct: 59  NEKTAPYYPKRGETVELVCESLGFKGKGICKVDGTGYVVMCDRALPGERFLGRVTRRKGS 118

Query: 135 YAEVTKVKTLSPHLDIVDAPCEYAAYCGGCKTQNLVYEAQLKAKEQQVHGLVVNVGKFSD 194
           YAEVTK+KT+SPH D+V+APCEYA+YCGGCKTQNL YEAQL+AKE+QVH L+ +VG+FSD
Sbjct: 119 YAEVTKMKTISPHKDLVEAPCEYASYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSD 178

Query: 195 KDPEFYSIMKPIVPCDFQFHYRNKMEFSFGPQKWLPKELIGEKQEGSESYALGLHAPGFF 254
            +P    ++KPIV CD QFHYRNKMEFSFGPQ+WLP E++ E+Q+G +++ALGLHAPGFF
Sbjct: 179 NNPGLEIVLKPIVACDIQFHYRNKMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFF 238

Query: 255 DKVLNVDGCLLQSEPANTVLATVQDCWRD-SVGLTPYNVYSHAGFLKHLMLRTGRNAESG 313
           DKVLNVD CLLQSEP N VLA VQDCWRD  + L+PY+  SH GFLKHLMLRTGRN E+G
Sbjct: 239 DKVLNVDKCLLQSEPGNLVLAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETG 298

Query: 314 SLELMVNFVTSSYKPELLKPLMEKISAIPEXXXXXXXXXXXXXXXXXXEEEYTLYGKSTI 373
           SLELMVNFVTSSYKPELLKPL+++IS+IP+                  E+EYTLYGK TI
Sbjct: 299 SLELMVNFVTSSYKPELLKPLVDRISSIPQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTI 358

Query: 374 TEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLA 433
           TEVLRGLTFQISANSFFQTNTHQAEVLYKLIE+ AGL+GDGSE+VLDLFCGTGTIGLTLA
Sbjct: 359 TEVLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLA 418

Query: 434 RGAKHVYGYEVVPQAISDAFRNAELNGITNATFVQGDLNKIGENFGNNFPKPDVVISDPN 493
           R AKHVYGYEVVPQAI+DA +NA++NGI NATF+QGDLNKIGE+FGNNFPKPD+VISDPN
Sbjct: 419 RRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPN 478

Query: 494 RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVKEQNIKGCYKLKSLQPVDM 553
           RPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDLDYLCHGV+E+N+KGCYKL S+QPVDM
Sbjct: 479 RPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDM 538

Query: 554 FPHTPHIECVCLLEL 568
           FPHTPHIECVCLLEL
Sbjct: 539 FPHTPHIECVCLLEL 553


>AT2G28450.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr2:12162180-12165761 REVERSE
          Length = 809

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 118/293 (40%), Gaps = 53/293 (18%)

Query: 215 YRNKMEFSFGPQKWLPKELIGEKQEGSESYALGLHAPGFFDKVLNVDGCLLQSEPANTVL 274
           YRNK EFS G        L G+   G   ++LG    G       VD C   S+ A+   
Sbjct: 331 YRNKCEFSVG------LSLQGKPTVG---FSLGSFCAGVTAVEEPVD-CPNVSKIASQYA 380

Query: 275 ATVQDCWRDSVGLTPYNVYSHAGFLKHLMLRTGR------NAESG-----SLELMVNF-V 322
           +  Q    +S     +N + H+GF + L +R GR      N E        + LMV   +
Sbjct: 381 SIFQKFIENS-KFQVWNRFQHSGFWRQLTVREGRKPGVFSNDEDAITRIAEVMLMVQVCL 439

Query: 323 TSSYKPELLKPLMEKISAIPEXXXXXX----------------------------XXXXX 354
           T S + E+     E   A  E                                       
Sbjct: 440 TGSDEAEVATEFEELAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPPDAPLQVLAIPI 499

Query: 355 XXXXXXXEEEYTLYGKSTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDG 414
                  E+   +  ++ I + +  L F IS  +FFQ NT  AE LY +  D A L  D 
Sbjct: 500 SDNGTDQEQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPDT 559

Query: 415 SEIVLDLFCGTGTIGLTLARGAKHVYGYEVVPQAISDAFRNAELNGITNATFV 467
             ++ D+ CGTGTIGLTLA     V G E+   A++DA RNA +NGI+N  F+
Sbjct: 560 --LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFI 610



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 32/111 (28%)

Query: 487 VVISDPNRPGMHMKLIKFLL---KLKAPRIVYVSCNPATCARDLDYLC------------ 531
           V I DP R G+H  +IK L    +LK  R+VY+SCNP T   +   LC            
Sbjct: 700 VAIVDPPRSGLHPAVIKALRTHPRLK--RLVYISCNPETLVANAIELCTPSFDEPDRGNK 757

Query: 532 ---------------HGVKEQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 567
                          H  K       ++      VD+FPHT H E V LLE
Sbjct: 758 NYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMAVDLFPHTDHCEMVMLLE 808