Jatropha Genome Database

JcCA0310831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310831.10 - phase: 0 /pseudo/partial/short
         (41 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55360.1 | Symbols:  | unknown protein | chr1:20666526-206685...    56   4e-09
AT2G44240.1 | Symbols:  | unknown protein | chr2:18289964-182922...    56   6e-09
AT5G56530.1 | Symbols:  | unknown protein | chr5:22889382-228914...    55   7e-09
AT3G13510.1 | Symbols:  | unknown protein | chr3:4403776-4405741...    55   1e-08
AT2G44250.1 | Symbols:  | unknown protein | chr2:18293457-182954...    54   2e-08
AT4G23370.1 | Symbols:  | unknown protein | chr4:12206362-122134...    54   3e-08
AT2G38255.1 | Symbols:  | unknown protein | chr2:16021750-160248...    53   4e-08
AT2G27320.1 | Symbols:  | unknown protein | chr2:11692900-116946...    53   4e-08
AT2G44220.1 | Symbols:  | unknown protein | chr2:18283803-182856...    52   9e-08
AT5G18460.1 | Symbols:  | unknown protein | chr5:6123205-6126505...    52   1e-07
AT5G05030.1 | Symbols:  | unknown protein | chr5:1484240-1486007...    52   1e-07
AT2G35250.1 | Symbols:  | unknown protein | chr2:14846662-148486...    50   2e-07
AT2G44210.2 | Symbols:  | unknown protein | chr2:18280809-182825...    50   3e-07
AT3G48230.1 | Symbols:  | unknown protein | chr3:17855715-178580...    50   4e-07
AT2G24950.1 | Symbols:  | unknown protein | chr2:10613105-106155...    49   7e-07
AT2G44210.1 | Symbols:  | unknown protein | chr2:18280809-182825...    49   7e-07
AT2G20170.2 | Symbols:  | unknown protein | chr2:8701013-8703395...    48   1e-06
AT2G20170.1 | Symbols:  | unknown protein | chr2:8701013-8703395...    48   1e-06
AT4G23350.1 | Symbols:  | unknown protein | chr4:12197446-121992...    48   1e-06
AT4G23360.1 | Symbols:  | unknown protein | chr4:12200269-122047...    48   1e-06
AT5G25410.1 | Symbols:  | unknown protein | chr5:8831692-8833437...    47   2e-06
AT4G17860.1 | Symbols:  | unknown protein | chr4:9924698-9926337...    47   2e-06
AT4G23390.1 | Symbols:  | unknown protein | chr4:12217913-122196...    45   9e-06

>AT1G55360.1 | Symbols:  | unknown protein |
          chr1:20666526-20668502 REVERSE
          Length = 422

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/32 (71%), Positives = 26/32 (81%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          +Q  DGDVIDCV I KQPAF HP LK+HKIQ+
Sbjct: 58 IQSSDGDVIDCVPISKQPAFDHPFLKDHKIQM 89


>AT2G44240.1 | Symbols:  | unknown protein |
          chr2:18289964-18292204 FORWARD
          Length = 402

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/32 (71%), Positives = 26/32 (81%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          ++ EDGD+IDCV I  QPAF HPLLKNH IQV
Sbjct: 50 IKSEDGDIIDCVLITSQPAFDHPLLKNHTIQV 81


>AT5G56530.1 | Symbols:  | unknown protein |
          chr5:22889382-22891439 FORWARD
          Length = 420

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          +Q  DGD+IDCV I KQPAF HP LK+HKIQ+
Sbjct: 57 IQSPDGDIIDCVHISKQPAFDHPFLKDHKIQM 88


>AT3G13510.1 | Symbols:  | unknown protein | chr3:4403776-4405741
          FORWARD
          Length = 419

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          +Q  DGD+IDC+ I KQPAF HP LK+HKIQ+
Sbjct: 56 IQSPDGDIIDCIPISKQPAFDHPFLKDHKIQM 87


>AT2G44250.1 | Symbols:  | unknown protein |
          chr2:18293457-18295414 FORWARD
          Length = 409

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/28 (78%), Positives = 24/28 (85%)

Query: 14 DGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          DGD+IDCV IY QPAF HPLLKNH IQ+
Sbjct: 57 DGDIIDCVWIYHQPAFDHPLLKNHTIQM 84


>AT4G23370.1 | Symbols:  | unknown protein |
          chr4:12206362-12213435 REVERSE
          Length = 1038

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           Q E+GD++DC+DI+KQ AF HP LKNH IQ+
Sbjct: 51 FQTENGDILDCIDIHKQLAFDHPQLKNHSIQL 82



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 10  LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           L+ E GD+ DC+DI+KQ AF H LLKNH IQ+
Sbjct: 687 LKTEYGDIFDCIDIHKQRAFDHHLLKNHSIQL 718



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 10  LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
            + + GD +DC+DI+KQ AF+HPLL NH IQ
Sbjct: 341 FRTKHGDTLDCIDIHKQLAFNHPLLINHSIQ 371


>AT2G38255.1 | Symbols:  | unknown protein |
          chr2:16021750-16024825 REVERSE
          Length = 333

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/22 (95%), Positives = 21/22 (95%)

Query: 19 DCVDIYKQPAFSHPLLKNHKIQ 40
          DCVDIYKQPAF HPLLKNHKIQ
Sbjct: 14 DCVDIYKQPAFQHPLLKNHKIQ 35


>AT2G27320.1 | Symbols:  | unknown protein |
          chr2:11692900-11694631 FORWARD
          Length = 323

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 6/39 (15%)

Query: 8  LVLQVEDGDV------IDCVDIYKQPAFSHPLLKNHKIQ 40
          L+ QV +G++       DCVDIYKQPAF HPLLK+HKIQ
Sbjct: 14 LLTQVAEGNIDSILKDFDCVDIYKQPAFQHPLLKHHKIQ 52


>AT2G44220.1 | Symbols:  | unknown protein |
          chr2:18283803-18285690 FORWARD
          Length = 403

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          ++ EDGDVIDCV I  QPAF H LLKNH IQ+
Sbjct: 50 IKSEDGDVIDCVPITNQPAFDHHLLKNHTIQM 81


>AT5G18460.1 | Symbols:  | unknown protein | chr5:6123205-6126505
          FORWARD
          Length = 430

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 24/33 (72%)

Query: 8  LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
            +Q  DGDVIDCV   KQPA  HPLLK+HKIQ
Sbjct: 63 FTIQSPDGDVIDCVPKRKQPALDHPLLKHHKIQ 95


>AT5G05030.1 | Symbols:  | unknown protein | chr5:1484240-1486007
          REVERSE
          Length = 363

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query: 8  LVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          + +++ +  + DCVDIYKQP+ SHPLL+NHK+Q+
Sbjct: 27 MSVKLNENTIYDCVDIYKQPSLSHPLLQNHKVQL 60


>AT2G35250.1 | Symbols:  | unknown protein |
          chr2:14846662-14848662 REVERSE
          Length = 342

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/25 (80%), Positives = 22/25 (88%)

Query: 16 DVIDCVDIYKQPAFSHPLLKNHKIQ 40
          D  DCV+IYKQPAF HPLLK+HKIQ
Sbjct: 24 DDFDCVEIYKQPAFQHPLLKDHKIQ 48


>AT2G44210.2 | Symbols:  | unknown protein | chr2:18280809-18282591
           FORWARD
          Length = 445

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 7   QLVLQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           + + Q  DGD+IDCV I  QPAF+HPLL NH +Q+
Sbjct: 76  EFLKQSPDGDMIDCVPITDQPAFAHPLLINHTVQM 110


>AT3G48230.1 | Symbols:  | unknown protein |
          chr3:17855715-17858019 FORWARD
          Length = 373

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQ 40
          +Q  DGD++DC D+  QP+  HPLL+NH+IQ
Sbjct: 22 VQSSDGDIVDCFDVRDQPSLDHPLLQNHEIQ 52


>AT2G24950.1 | Symbols:  | unknown protein |
          chr2:10613105-10615563 FORWARD
          Length = 411

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 9  VLQVEDGDVIDCVDIYKQPAFSHPLLKNH 37
          +++   GD  DCVD YKQPAF HPL+KNH
Sbjct: 70 IIKTIHGDSYDCVDFYKQPAFDHPLMKNH 98


>AT2G44210.1 | Symbols:  | unknown protein |
          chr2:18280809-18282591 FORWARD
          Length = 415

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
          ++  DGD+IDCV I  QPAF+HPLL NH +Q+
Sbjct: 49 IKSPDGDMIDCVPITDQPAFAHPLLINHTVQM 80


>AT2G20170.2 | Symbols:  | unknown protein | chr2:8701013-8703395
          FORWARD
          Length = 401

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           Q + G ++DC+DI KQ AF HPLLKNH IQ+
Sbjct: 51 FQTKHGYILDCIDIQKQLAFDHPLLKNHSIQL 82


>AT2G20170.1 | Symbols:  | unknown protein | chr2:8701013-8703395
          FORWARD
          Length = 401

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           Q + G ++DC+DI KQ AF HPLLKNH IQ+
Sbjct: 51 FQTKHGYILDCIDIQKQLAFDHPLLKNHSIQL 82


>AT4G23350.1 | Symbols:  | unknown protein |
          chr4:12197446-12199200 REVERSE
          Length = 386

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           + E GD+ DC+DI+KQ AF H LLKNH +Q+
Sbjct: 54 FKTEHGDIFDCIDIHKQLAFDHHLLKNHSVQL 85


>AT4G23360.1 | Symbols:  | unknown protein |
          chr4:12200269-12204792 REVERSE
          Length = 873

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           + E GD+ DC+DI+KQ AF H LLKNH +Q+
Sbjct: 54 FKTEHGDIFDCIDIHKQLAFDHHLLKNHSVQL 85


>AT5G25410.1 | Symbols:  | unknown protein | chr5:8831692-8833437
          FORWARD
          Length = 369

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           ++ +    DC++IYKQP   HPLLKNHKIQ+
Sbjct: 35 FKIRENVTYDCINIYKQPGLDHPLLKNHKIQM 66


>AT4G17860.1 | Symbols:  | unknown protein | chr4:9924698-9926337
          REVERSE
          Length = 356

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/23 (73%), Positives = 22/23 (95%)

Query: 19 DCVDIYKQPAFSHPLLKNHKIQV 41
          +CVDIYKQPAF HPL+K+H+IQ+
Sbjct: 29 ECVDIYKQPAFQHPLMKDHQIQM 51


>AT4G23390.1 | Symbols:  | unknown protein |
          chr4:12217913-12219687 REVERSE
          Length = 401

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 10 LQVEDGDVIDCVDIYKQPAFSHPLLKNHKIQV 41
           Q E G + DC+DI KQ AF HPLLKNH I++
Sbjct: 52 FQTEHGYIFDCIDIQKQLAFDHPLLKNHSIKL 83