Jatropha Genome Database

JcCA0310371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310371.10 - phase: 0 
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18660.1 | Symbols: EXLB3 | EXLB3 (EXPANSIN-LIKE B3 PRECURSOR...    64   5e-11
AT4G30380.1 | Symbols: EXLB2 | EXLB2 (EXPANSIN-LIKE B2 PRECURSOR...    62   3e-10

>AT2G18660.1 | Symbols: EXLB3 | EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) |
           chr2:8091032-8091644 REVERSE
          Length = 130

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 56  LFPVSHGDVGTAAHYSPPYLPTACYGNDESQFPSSNLFAAASEGIWDNGAACGRQYLVRC 115
           L P++    G A +Y PPY  +ACYG          L       +W NG ACGR+Y VRC
Sbjct: 19  LAPIAEAAQGKAVYYDPPYTRSACYGTQRE-----TLVVGVKNNLWQNGRACGRRYRVRC 73

Query: 116 ISAVAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNVEF 174
           I A    T N ++    R VD       R   NG  + LS  AF  IA+    ++ V +
Sbjct: 74  IGA----TYNFDRACTGRTVDVKVVDFCREPCNG-DLNLSRDAFRVIANTDAGNIRVVY 127


>AT4G30380.1 | Symbols: EXLB2 | EXLB2 (EXPANSIN-LIKE B2 PRECURSOR) |
           chr4:14860486-14860994 FORWARD
          Length = 123

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 18/122 (14%)

Query: 56  LFPVSHGDVGTAAHYSPPYLPTACY-GNDESQFPSSNLFAAASEGIWDNGAACGRQYLVR 114
           LF  S+   G A  Y+  Y P  CY G  E       + AAAS+ +WDNG  CG+ + V+
Sbjct: 15  LFSFSYATPGIATFYTS-YTP--CYRGTQEGV-----MIAAASDTLWDNGRVCGKMFTVK 66

Query: 115 CISA--VAPNTCNREKIIRVRIVDRAQTSVSRPSRNGATIILSDIAFAQIASPSVSSVNV 172
           C       P+ C   K ++V+IVD        PS   +T+ LS  AFAQIA+P    +N+
Sbjct: 67  CSGPRNAVPHPCT-GKSVKVKIVDHC------PSGCASTLDLSREAFAQIANPVAGIINI 119

Query: 173 EF 174
           ++
Sbjct: 120 DY 121