Jatropha Genome Database

JcCA0310221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.20 + phase: 0 
         (524 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06350.1 | Symbols: EMB3004, MEE32 | MEE32 (MATERNAL EFFECT E...   671   0.0  

>AT3G06350.1 | Symbols: EMB3004, MEE32 | MEE32 (MATERNAL EFFECT
           EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or
           NADPH binding / binding / catalytic/ shikimate
           5-dehydrogenase | chr3:1924536-1927701 REVERSE
          Length = 603

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/525 (63%), Positives = 426/525 (81%), Gaps = 4/525 (0%)

Query: 2   SDLQLSNREVQSSPTLLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQDL 61
           +++++ + ++  +P+L+C P+M  ++D+M+IE  KA E+GAD+VEIRLD L++F+P +DL
Sbjct: 80  TEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDL 139

Query: 62  EILIKRSPLPTLVTYRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSSI 121
           + +IK+SPLPTL TYRP WEGGQYEGDE +R+D LRLAM+LGA+Y+DVEL+VA +F  SI
Sbjct: 140 KTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSI 199

Query: 122 YGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRIM 181
            GKKP  F+VIVSSHN+ NTPS E +  LVARIQ TGADI+KIATTA+DI D AR+F I 
Sbjct: 200 DGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHIT 259

Query: 182 VHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRLI 241
             +Q+P IG+VMGERG +SR+L  KFGGYLT+G L++  +SAPGQPT+KDLLDLYNFR I
Sbjct: 260 SKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRI 319

Query: 242 RPDTKVYGIIGKPVGHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASGC 301
            PDTKVYGIIGKPV HSKSP++ N AFKSV  N VY+H LVD++  F   YSS DFA G 
Sbjct: 320 GPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFA-GF 378

Query: 302 SCTIPHKEVALKCMDEIDPIARKIGAINNIVRR-PDGTLMAYNTDYIGAISAIEDGLR-- 358
           SCTIPHKE AL+C DE+DP+A+ IGA+N I+RR  DG L+ YNTD IG+ISAIEDGLR  
Sbjct: 379 SCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSS 438

Query: 359 ELNGAVPAGTSPLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGG 418
               +VP+ +SPL  K  VV+GAGGAGK+LAYGA +KGA+VV+ANRTYERA ELA+ +GG
Sbjct: 439 GDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGG 498

Query: 419 QAMTLAEAEHFHPEDGMVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLL 478
           +A++L + +++HPEDGMVLANTTS+GM+PN + TP+ K  LKHY L FDA+YTP+ TRLL
Sbjct: 499 KALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLL 558

Query: 479 REAKESGAVIVYGTEMLIRQGFEQYKNFTGLPAPEELFRQLMEKH 523
           REA+ESGA+ V G+EM +RQ +EQ++ FTGLPAP+EL+ Q+M K+
Sbjct: 559 REAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSKY 603