Jatropha Genome Database

JcCA0310221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.10 - phase: 0 
         (260 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58730.1 | Symbols:  | vacuolar ATP synthase subunit D (VATD)...   423   e-119

>AT3G58730.1 | Symbols:  | vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) | chr3:21718495-21719280 REVERSE
          Length = 261

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/261 (78%), Positives = 232/261 (88%), Gaps = 1/261 (0%)

Query: 1   MSGQSQRLNVVPTVTMLAVMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMG 60
           M+GQ+ RLNVVPTVTML VMKARLVGATRGHALLKKKSDALTVQFR +LKKIVTAKESMG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 61  DIMKSSAFALTEAKYVAGENVKHVVLENVQSASLKVRSRQENVAGVKLPKFEYFTEGETK 120
           D+MK+S+FALTE KYVAG+NVKHVVLENV+ A+LKVRSR EN+AGVKLPKF++F+EGETK
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 121 NDLTGLARGGQQVQACRAAYIKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180
           NDLTGLARGGQQV+ACR AY+K+IEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 181 RIENTINYIKGELDELEREDFFRLKKVQGYKKREIERQLXXXXXXXXXXXXXXVSLQKGI 240
           ++ENTI+YIKGELDELEREDFFRLKK+QGYK+RE+ERQ               +S+Q+GI
Sbjct: 181 KLENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGI 240

Query: 241 SLKSAHNLL-SVAEKDEDIIF 260
           S+ +A N L   AEKD DIIF
Sbjct: 241 SINAARNFLVGGAEKDSDIIF 261