Jatropha Genome Database
- JcCA0310141.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0310141.30 + phase: 0 /TE/partial
(390 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Symbols: | RNase H domain-containing protein | ch... 61 1e-09
AT3G01410.1 | Symbols: | RNase H domain-containing protein | ch... 61 1e-09
AT5G51080.2 | Symbols: | RNase H domain-containing protein | ch... 55 9e-08
AT5G51080.1 | Symbols: | RNase H domain-containing protein | ch... 55 9e-08
AT5G51080.3 | Symbols: | RNase H domain-containing protein | ch... 54 1e-07
AT1G24090.1 | Symbols: | RNase H domain-containing protein | ch... 50 3e-06
>AT3G01410.2 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 294
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 106 FDGAS--NYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKV 163
FDGAS N G G + + + + + TNN AEY A + GL +AL+ K
Sbjct: 159 FDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKN 218
Query: 164 LRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALAT 223
+ V GDS L+ Q WK ++ ++ EL F+ ++ R KN AD A
Sbjct: 219 VHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN 278
Query: 224 LASMVNVGGDQVI 236
A + G QVI
Sbjct: 279 SAIFLADGQTQVI 291
>AT3G01410.1 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 294
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 106 FDGAS--NYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKV 163
FDGAS N G G + + + + + TNN AEY A + GL +AL+ K
Sbjct: 159 FDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKN 218
Query: 164 LRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALAT 223
+ V GDS L+ Q WK ++ ++ EL F+ ++ R KN AD A
Sbjct: 219 VHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN 278
Query: 224 LASMVNVGGDQVI 236
A + G QVI
Sbjct: 279 SAIFLADGQTQVI 291
>AT5G51080.2 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 322
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 80 IEDPMPEVEFPDEDLLSLESEVWEMY------FDGAS--NYHGNGVGVLFKTPCGEFVPI 131
+D +P E L LE Y FDGAS N +G + KT G +
Sbjct: 158 FQDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFK 217
Query: 132 AVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPY 191
+ TNN AEY I GL+ A+E ++V DS L+ Q +WK+ E L
Sbjct: 218 MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKL 277
Query: 192 LQRLDELAQQFEELSFHYLPRAKNQFADALATLASMVNVGGDQV 235
+ +L+ + ++ R+ N AD A +A+ ++ G +V
Sbjct: 278 HKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 321
>AT5G51080.1 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 322
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 80 IEDPMPEVEFPDEDLLSLESEVWEMY------FDGAS--NYHGNGVGVLFKTPCGEFVPI 131
+D +P E L LE Y FDGAS N +G + KT G +
Sbjct: 158 FQDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFK 217
Query: 132 AVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPY 191
+ TNN AEY I GL+ A+E ++V DS L+ Q +WK+ E L
Sbjct: 218 MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKL 277
Query: 192 LQRLDELAQQFEELSFHYLPRAKNQFADALATLASMVNVGGDQV 235
+ +L+ + ++ R+ N AD A +A+ ++ G +V
Sbjct: 278 HKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 321
>AT5G51080.3 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770486 REVERSE
Length = 259
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 80 IEDPMPEVEFPDEDLLSLESEVWEMY------FDGAS--NYHGNGVGVLFKTPCGEFVPI 131
+D +P E L LE Y FDGAS N +G + KT G +
Sbjct: 95 FQDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFK 154
Query: 132 AVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPY 191
+ TNN AEY I GL+ A+E ++V DS L+ Q +WK+ E L
Sbjct: 155 MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKL 214
Query: 192 LQRLDELAQQFEELSFHYLPRAKNQFADALATLASMVNVG 231
+ +L+ + ++ R+ N AD A +A+ ++ G
Sbjct: 215 HKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEG 254
>AT1G24090.1 | Symbols: | RNase H domain-containing protein |
chr1:8520834-8524690 FORWARD
Length = 535
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 73 DQLAELPIE-DPMPEVEFPDEDLLSLESEVWEMYFDGAS--NYHGNGVGVLFKTPCGEFV 129
DQL I DP+ ++ E + E + FDGAS N +G + KT G +
Sbjct: 188 DQLPSASISYDPLEKLS-KVEPSAYISDETCFIEFDGASKGNPGLSGAAAVLKTEDGSLI 246
Query: 130 PIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALR---KWKIKEE 186
+ TNN AEY A I GL+ A+E K ++V GDS L+ Q + +WK+ E
Sbjct: 247 CRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQKQQIKGQWKVNHE 306
Query: 187 RLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALATLA 225
L + L + ++ R N AD A LA
Sbjct: 307 VLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLA 345