Jatropha Genome Database

JcCA0310141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.20 - phase: 2 /pseudo
         (329 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58220.1 | Symbols: TTL | TTL (Transthyretin-Like protein); s...   267   8e-72
AT5G58220.3 | Symbols: TTL | TTL (Transthyretin-Like protein); s...   245   3e-65
AT5G58220.2 | Symbols: TTL | TTL (Transthyretin-Like protein); s...   218   4e-57

>AT5G58220.1 | Symbols: TTL | TTL (Transthyretin-Like protein);
           steroid binding | chr5:23554546-23555861 REVERSE
          Length = 324

 Score =  267 bits (682), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 141/248 (56%), Positives = 166/248 (66%), Gaps = 8/248 (3%)

Query: 82  FSFWSTCPLQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQ 141
           F+  S   LQEL+ WN  YK+KFGFIF+ICASGR+  E+L  LK+RY+NRPIVE EIAA 
Sbjct: 85  FATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAM 144

Query: 142 EQMKITELRLGKLFSTKINAASTGNQHSTSFGAKAEEDRVGIIGGHLTAALNFSSGKASQ 201
           EQMKITELR+ KLFS K    S  +  S+    K + DR+ IIGGHL  A    + K S+
Sbjct: 145 EQMKITELRMAKLFSDKAKVISETDSSSSPVSTKPQ-DRLRIIGGHLNVAAEAKAPKRSR 203

Query: 202 XXXXXXXXXXXHVLDVSRGCPAGGVEVCLEMWNGTQPRPLFGEIGVDSWVVQGASTTDAD 261
                      HVLDVSRG PA GVEV LE+W+GT   P F   G   W   G S TD D
Sbjct: 204 PPITT------HVLDVSRGAPAAGVEVHLEVWSGTT-GPSFVHGGGGVWSSVGTSATDRD 256

Query: 262 GRCGQLMSMVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPF 321
           GR G LM +VD +NPG YRISF+T KY P  FFPYVSIVF++ E+Q  EHFHVPLL +PF
Sbjct: 257 GRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPYVSIVFQVTESQKWEHFHVPLLLAPF 316

Query: 322 SFTTYRGS 329
           SF+TYRGS
Sbjct: 317 SFSTYRGS 324


>AT5G58220.3 | Symbols: TTL | TTL (Transthyretin-Like protein);
           steroid binding | chr5:23554546-23555861 REVERSE
          Length = 311

 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/248 (52%), Positives = 155/248 (62%), Gaps = 21/248 (8%)

Query: 82  FSFWSTCPLQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQ 141
           F+  S   LQEL+ WN  YK+KFGFIF+ICASGR+  E+L  LK+RY+NRPIVE EIAA 
Sbjct: 85  FATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAM 144

Query: 142 EQMKITELRLGKLFSTKINAASTGNQHSTSFGAKAEEDRVGIIGGHLTAALNFSSGKASQ 201
           EQMKITELR+ KLFS K    S  +  S+    K + +                    ++
Sbjct: 145 EQMKITELRMAKLFSDKAKVISETDSSSSPVSTKPQAE--------------------AK 184

Query: 202 XXXXXXXXXXXHVLDVSRGCPAGGVEVCLEMWNGTQPRPLFGEIGVDSWVVQGASTTDAD 261
                      HVLDVSRG PA GVEV LE+W+GT   P F   G   W   G S TD D
Sbjct: 185 APKRSRPPITTHVLDVSRGAPAAGVEVHLEVWSGTT-GPSFVHGGGGVWSSVGTSATDRD 243

Query: 262 GRCGQLMSMVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPF 321
           GR G LM +VD +NPG YRISF+T KY P  FFPYVSIVF++ E+Q  EHFHVPLL +PF
Sbjct: 244 GRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPYVSIVFQVTESQKWEHFHVPLLLAPF 303

Query: 322 SFTTYRGS 329
           SF+TYRGS
Sbjct: 304 SFSTYRGS 311


>AT5G58220.2 | Symbols: TTL | TTL (Transthyretin-Like protein);
           steroid binding | chr5:23554546-23555861 REVERSE
          Length = 286

 Score =  218 bits (555), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 121/248 (48%), Positives = 143/248 (57%), Gaps = 46/248 (18%)

Query: 82  FSFWSTCPLQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQ 141
           F+  S   LQEL+ WN  YK+KFGFIF+ICASGR+  E+L  LK+RY+NRPIVE EIAA 
Sbjct: 85  FATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAM 144

Query: 142 EQMKITELRLGKLFSTKINAASTGNQHSTSFGAKAEEDRVGIIGGHLTAALNFSSGKASQ 201
           EQMKITELR+ KLFS K    S  +  S+    K +                        
Sbjct: 145 EQMKITELRMAKLFSDKAKVISETDSSSSPVSTKPQ------------------------ 180

Query: 202 XXXXXXXXXXXHVLDVSRGCPAGGVEVCLEMWNGTQPRPLFGEIGVDSWVVQGASTTDAD 261
                                A GVEV LE+W+GT   P F   G   W   G S TD D
Sbjct: 181 ---------------------AAGVEVHLEVWSGTT-GPSFVHGGGGVWSSVGTSATDRD 218

Query: 262 GRCGQLMSMVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPF 321
           GR G LM +VD +NPG YRISF+T KY P  FFPYVSIVF++ E+Q  EHFHVPLL +PF
Sbjct: 219 GRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPYVSIVFQVTESQKWEHFHVPLLLAPF 278

Query: 322 SFTTYRGS 329
           SF+TYRGS
Sbjct: 279 SFSTYRGS 286