Jatropha Genome Database

JcCA0310141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.10 - phase: 0 /pseudo
         (142 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29000.1 | Symbols:  | heavy-metal-associated domain-containi...   105   1e-23
AT3G02960.1 | Symbols:  | copper-binding protein-related | chr3:...    59   1e-09
AT5G50740.1 | Symbols:  | metal ion binding | chr5:20635983-2063...    50   4e-07
AT5G50740.3 | Symbols:  | metal ion binding | chr5:20635983-2063...    50   4e-07
AT5G60800.1 | Symbols:  | heavy-metal-associated domain-containi...    50   6e-07
AT2G36950.1 | Symbols:  | heavy-metal-associated domain-containi...    49   1e-06

>AT1G29000.1 | Symbols:  | heavy-metal-associated
          domain-containing protein | chr1:10113018-10114340
          FORWARD
          Length = 287

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 64/71 (90%)

Query: 18 ADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIE 77
           DEIITAVY+V+LHC +CA DIK PL+R +GV NVDFD++K+EIKV+G I+V+K+HKQIE
Sbjct: 11 GDEIITAVYKVHLHCRKCACDIKKPLLRFQGVQNVDFDLEKNEIKVKGKIEVVKIHKQIE 70

Query: 78 KFSQRKVELVT 88
          K+S++KVEL++
Sbjct: 71 KWSKKKVELIS 81


>AT3G02960.1 | Symbols:  | copper-binding protein-related |
           chr3:667245-668626 REVERSE
          Length = 246

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 18  ADEIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIE 77
           A EI TA+ R+N+HCE C  +IK  + + +G+ +V+ D  KS + V GV+D  K+ ++I+
Sbjct: 122 APEIKTAILRMNMHCEGCVHEIKRGIEKIKGIQSVEPDRSKSTVVVRGVMDPPKLVEKIK 181

Query: 78  KFSQRKVELVTQV 90
           K   +  EL++Q+
Sbjct: 182 KKLGKHAELLSQI 194


>AT5G50740.1 | Symbols:  | metal ion binding |
           chr5:20635983-20637847 REVERSE
          Length = 283

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 21  IITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGV 66
           ++T V RV++HCE CA +I+  +MR +GV +V+ D   S++ V+GV
Sbjct: 123 VVTVVLRVHMHCEACAMEIQKRIMRMKGVESVEPDFKASQVSVKGV 168


>AT5G50740.3 | Symbols:  | metal ion binding |
           chr5:20635983-20637970 REVERSE
          Length = 290

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 21  IITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGV 66
           ++T V RV++HCE CA +I+  +MR +GV +V+ D   S++ V+GV
Sbjct: 130 VVTVVLRVHMHCEACAMEIQKRIMRMKGVESVEPDFKASQVSVKGV 175


>AT5G60800.1 | Symbols:  | heavy-metal-associated domain-containing
           protein | chr5:24461116-24462464 REVERSE
          Length = 283

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 46/75 (61%)

Query: 20  EIITAVYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIEKF 79
            + TAV ++N HC+ C   I+  + +T+GV+ +  D +K+ + V+G +DV K+ + + + 
Sbjct: 131 PVTTAVLKLNFHCQGCIGKIQKTVTKTKGVNGLTMDKEKNLLTVKGTMDVKKLVEILSEK 190

Query: 80  SQRKVELVTQVKIKD 94
            +R VE+V   K KD
Sbjct: 191 LKRAVEIVPPKKEKD 205


>AT2G36950.1 | Symbols:  | heavy-metal-associated domain-containing
           protein | chr2:15515216-15516754 FORWARD
          Length = 386

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%)

Query: 25  VYRVNLHCEQCARDIKNPLMRTRGVHNVDFDIDKSEIKVEGVIDVIKVHKQIEKFSQRKV 84
           VY+V++HCE CA+ IK  +    GV +V  D   +++ V G ID +K+ +++E+ ++RKV
Sbjct: 53  VYKVDMHCEGCAKKIKRMVKHFDGVKDVTADTGGNKLLVVGKIDPVKLQEKLEEKTKRKV 112

Query: 85  ELV 87
            L 
Sbjct: 113 VLA 115