Jatropha Genome Database
- JcCA0310021.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0310021.20 + phase: 1 /partial
(237 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46970.1 | Symbols: PIL1 | PIL1 (PHYTOCHROME INTERACTING FACT... 119 2e-27
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTE... 107 6e-24
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTE... 107 6e-24
AT3G62090.2 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTIN... 92 2e-19
AT3G62090.1 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTIN... 92 2e-19
AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTIN... 89 2e-18
AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING FACT... 89 2e-18
AT5G67110.1 | Symbols: ALC | ALC (ALCATRAZ); DNA binding / trans... 87 1e-17
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 86 2e-17
AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA binding / transc... 84 6e-17
AT5G61270.1 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING FACT... 78 4e-15
AT3G59060.4 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 78 5e-15
AT3G59060.3 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 78 5e-15
AT3G59060.2 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 78 5e-15
AT3G59060.1 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 78 5e-15
AT5G61270.2 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING FACT... 78 5e-15
AT4G00050.1 | Symbols: UNE10 | UNE10 (unfertilized embryo sac 10... 78 6e-15
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 74 7e-14
AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 74 1e-13
AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 72 2e-13
AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 72 2e-13
AT4G28800.1 | Symbols: | transcription factor | chr4:14221970-1... 72 4e-13
AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interactin... 71 7e-13
AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interactin... 71 7e-13
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOC... 67 9e-12
AT1G10120.1 | Symbols: | DNA binding / transcription factor | c... 65 3e-11
AT1G27740.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 64 6e-11
AT1G59640.2 | Symbols: ZCW32, BPEP | ZCW32; DNA binding / transc... 64 6e-11
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 64 1e-10
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 64 1e-10
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 64 1e-10
AT2G14760.1 | Symbols: | basic helix-loop-helix protein / bHLH ... 64 1e-10
AT1G59640.1 | Symbols: ZCW32, BPE, BPEUB | ZCW32; DNA binding / ... 63 1e-10
AT4G36540.1 | Symbols: BEE2 | BEE2 (BR Enhanced Expression 2); D... 63 2e-10
AT4G36540.2 | Symbols: BEE2 | BEE2 (BR Enhanced Expression 2); D... 63 2e-10
AT1G68240.1 | Symbols: | transcription factor | chr1:25575179-2... 63 2e-10
AT1G68240.2 | Symbols: | transcription factor | chr1:25575280-2... 62 2e-10
AT4G33880.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 62 2e-10
AT4G28815.1 | Symbols: | transcription regulator | chr4:1422871... 62 3e-10
AT1G26260.2 | Symbols: CIB5 | CIB5 (CRYPTOCHROME-INTERACTING BAS... 62 3e-10
AT1G26260.1 | Symbols: CIB5 | CIB5 (CRYPTOCHROME-INTERACTING BAS... 62 3e-10
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF G... 61 5e-10
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF G... 61 5e-10
AT1G26260.3 | Symbols: CIB5 | CIB5 (CRYPTOCHROME-INTERACTING BAS... 61 6e-10
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 7e-10
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 7e-10
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 7e-10
AT2G46510.1 | Symbols: ATAIB | ATAIB (ABA-INDUCIBLE BHLH-TYPE TR... 61 7e-10
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 8e-10
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 8e-10
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 60 1e-09
AT2G22770.1 | Symbols: NAI1 | NAI1; DNA binding / transcription ... 60 2e-09
AT4G34530.1 | Symbols: CIB1 | CIB1 (CRYPTOCHROME-INTERACTING BAS... 59 2e-09
AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 59 3e-09
AT5G37800.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 59 3e-09
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 58 4e-09
AT1G66470.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 58 5e-09
AT4G28811.1 | Symbols: | transcription regulator | chr4:1422533... 57 7e-09
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 57 1e-08
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 57 1e-08
AT5G41315.1 | Symbols: GL3, MYC6.2 | GL3 (GLABROUS 3); protein b... 57 1e-08
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 55 3e-08
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 55 3e-08
AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like pr... 55 4e-08
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 55 4e-08
AT2G43140.1 | Symbols: | DNA binding / transcription factor | c... 54 6e-08
AT5G46760.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 54 6e-08
AT4G17880.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 54 7e-08
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 54 8e-08
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 54 8e-08
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 54 9e-08
AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 54 9e-08
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 54 1e-07
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 53 1e-07
AT1G18400.1 | Symbols: BEE1 | BEE1 (BR Enhanced Expression 1); t... 53 2e-07
AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 53 2e-07
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) family p... 52 2e-07
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 52 3e-07
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 52 3e-07
AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 52 3e-07
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 52 4e-07
AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein bindin... 51 6e-07
AT5G08130.3 | Symbols: | BIM1; DNA binding / protein binding / ... 51 6e-07
AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein bindin... 51 6e-07
AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) family p... 51 6e-07
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 51 7e-07
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 51 7e-07
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 |... 51 8e-07
AT1G73830.1 | Symbols: BEE3 | BEE3 (BR ENHANCED EXPRESSION 3); D... 51 8e-07
AT5G67110.2 | Symbols: ALC | ALC (ALCATRAZ); DNA binding / trans... 51 8e-07
AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like pr... 50 9e-07
AT4G02590.2 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12... 50 9e-07
AT4G02590.1 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12... 50 9e-07
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | IND (INDEHISCEN... 50 1e-06
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 50 1e-06
AT4G02590.3 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12... 50 1e-06
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 50 1e-06
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) family p... 50 1e-06
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 50 1e-06
AT4G38070.1 | Symbols: | bHLH family protein | chr4:17876535-17... 50 1e-06
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 49 2e-06
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 49 3e-06
AT5G67110.3 | Symbols: ALC | ALC (ALCATRAZ); DNA binding / trans... 49 3e-06
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF... 49 4e-06
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF... 49 4e-06
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF... 49 4e-06
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 49 4e-06
AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA bind... 48 4e-06
AT1G12860.1 | Symbols: SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA bindi... 47 7e-06
>AT2G46970.1 | Symbols: PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR
3-LIKE 1); transcription factor | chr2:19295617-19297678
REVERSE
Length = 416
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 5 ASASVCSLGASNDLSYSSLK----TITEDMGRMTSENEHAEDQQVPKPASARAG---AKR 57
AS+S S G S DLS SLK I E+ S N E AR KR
Sbjct: 168 ASSSKFSRGTSRDLSCCSLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKR 227
Query: 58 RPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSM 117
+ + VH L ERKRR + NKKMR LQ LLPN K DKAS+LD AI+Y++TLQLQVQ+MSM
Sbjct: 228 KRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSM 287
Query: 118 GSRFWMPQMMLPNAMQQIHNLAHFSPMGIRMGMGVGS 154
G+ P MLP + H+SPMG+ M MG +
Sbjct: 288 GNGLIRPPTMLP--------MGHYSPMGLGMHMGAAA 316
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME
INTERACTING FACTOR 3); DNA binding / protein binding /
transcription factor/ transcription regulator |
chr1:3077216-3079367 FORWARD
Length = 524
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 17/146 (11%)
Query: 2 EKAASASVCS-LGASNDLS-------------YSSLKTITEDMGRMTSENEHAEDQQVPK 47
+++ A VCS +G+ N L +S+++ I D E E + ++
Sbjct: 274 QESEKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDI--DCHSEDVEEESGDGRKEAG 331
Query: 48 PASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKT 107
P+ G+KR + VH+LSER+RR +IN+KMR LQ L+PN +KVDKAS+LD AIEYLK+
Sbjct: 332 PSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKS 391
Query: 108 LQLQVQIMSMGSRFWM-PQMMLPNAM 132
LQLQVQIMSM S +++ P +M P M
Sbjct: 392 LQLQVQIMSMASGYYLPPAVMFPPGM 417
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME
INTERACTING FACTOR 3); DNA binding / protein binding /
transcription factor/ transcription regulator |
chr1:3077216-3079367 FORWARD
Length = 524
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 17/146 (11%)
Query: 2 EKAASASVCS-LGASNDLS-------------YSSLKTITEDMGRMTSENEHAEDQQVPK 47
+++ A VCS +G+ N L +S+++ I D E E + ++
Sbjct: 274 QESEKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDI--DCHSEDVEEESGDGRKEAG 331
Query: 48 PASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKT 107
P+ G+KR + VH+LSER+RR +IN+KMR LQ L+PN +KVDKAS+LD AIEYLK+
Sbjct: 332 PSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKS 391
Query: 108 LQLQVQIMSMGSRFWM-PQMMLPNAM 132
LQLQVQIMSM S +++ P +M P M
Sbjct: 392 LQLQVQIMSMASGYYLPPAVMFPPGM 417
>AT3G62090.2 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 2); protein binding / transcription factor
| chr3:22989097-22990546 REVERSE
Length = 363
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 69/109 (63%), Gaps = 8/109 (7%)
Query: 44 QVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIE 103
QVP + +A KR+ ++ ER +R+ INKKMR LQ LLPNS K D S+LD AI
Sbjct: 174 QVPA-RTRKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAIN 232
Query: 104 YLKTLQLQVQIMSMGSRFWMPQMMLPNAMQQIHNLAHFSPMGIRMGMGV 152
Y+ LQLQVQ+M+MG+RF P MM+P ++S MG+ MG+G+
Sbjct: 233 YMTNLQLQVQMMTMGNRFVTPSMMMPLG-------PNYSQMGLAMGVGM 274
>AT3G62090.1 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 2); protein binding / transcription factor
| chr3:22989097-22990495 REVERSE
Length = 346
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 69/109 (63%), Gaps = 8/109 (7%)
Query: 44 QVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIE 103
QVP + +A KR+ ++ ER +R+ INKKMR LQ LLPNS K D S+LD AI
Sbjct: 157 QVPA-RTRKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAIN 215
Query: 104 YLKTLQLQVQIMSMGSRFWMPQMMLPNAMQQIHNLAHFSPMGIRMGMGV 152
Y+ LQLQVQ+M+MG+RF P MM+P ++S MG+ MG+G+
Sbjct: 216 YMTNLQLQVQMMTMGNRFVTPSMMMPLG-------PNYSQMGLAMGVGM 257
>AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 5); DNA binding / phytochrome binding /
transcription factor | chr2:8704525-8706237 REVERSE
Length = 407
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 99/214 (46%), Gaps = 41/214 (19%)
Query: 24 KTITEDMGR-----MTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKK 78
KT +D R T++ + ++ + + KR VH+LSERKRR +IN++
Sbjct: 173 KTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINER 232
Query: 79 MRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMG----------SRFWMPQMML 128
M+ LQ L+P +K DKAS+LD AIEY+K+LQLQ+Q+MSMG + +MP M +
Sbjct: 233 MKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAM 292
Query: 129 ----------PNAMQQIHNLAHFSPMGIRMGMGVGSFQNPAVLGFPARILPMQMSVPQPP 178
P+ M + LA P+ + M Q P P+R+ VP
Sbjct: 293 GMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVF-----VPNQQ 347
Query: 179 FLPFVGGGGSSMLHPSVPVTANSGIATPMGQIRG 212
+ P G P P +G P Q RG
Sbjct: 348 YDPTSG-------QPQYP----AGYTDPYQQFRG 370
>AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING FACTOR
3-LIKE 5); DNA binding / phytochrome binding /
transcription factor | chr2:8704525-8706538 REVERSE
Length = 478
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 99/214 (46%), Gaps = 41/214 (19%)
Query: 24 KTITEDMGR-----MTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKK 78
KT +D R T++ + ++ + + KR VH+LSERKRR +IN++
Sbjct: 244 KTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINER 303
Query: 79 MRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMG----------SRFWMPQMML 128
M+ LQ L+P +K DKAS+LD AIEY+K+LQLQ+Q+MSMG + +MP M +
Sbjct: 304 MKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAM 363
Query: 129 ----------PNAMQQIHNLAHFSPMGIRMGMGVGSFQNPAVLGFPARILPMQMSVPQPP 178
P+ M + LA P+ + M Q P P+R+ VP
Sbjct: 364 GMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVF-----VPNQQ 418
Query: 179 FLPFVGGGGSSMLHPSVPVTANSGIATPMGQIRG 212
+ P G P P +G P Q RG
Sbjct: 419 YDPTSG-------QPQYP----AGYTDPYQQFRG 441
>AT5G67110.1 | Symbols: ALC | ALC (ALCATRAZ); DNA binding /
transcription factor | chr5:26785332-26786338 REVERSE
Length = 210
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 49 ASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL 108
A R KR + H+LSE+KRR KIN+KM+ LQ L+PNS+K DKAS+LD AIEYLK L
Sbjct: 83 AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQL 142
Query: 109 QLQVQIMSMGSRFWMPQMMLP 129
QLQVQ +++ + + M LP
Sbjct: 143 QLQVQTLAVMNGLGLNPMRLP 163
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14218329-14220173 FORWARD
Length = 413
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 26 ITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQAL 85
IT++ R T E + E+Q + A +KR +H LSER+RR KIN+ M+ LQ L
Sbjct: 245 ITDERKRKTREETNVENQGTEE-ARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQEL 303
Query: 86 LPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSRFWMPQMMLPNAMQQIHNLAHFSPMG 145
LP K D++S+LD+ IEY+K+LQ Q+Q+ SMG P M N QQ + H
Sbjct: 304 LPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMGHVMIPPMMYAGNIQQQY--MPH----- 356
Query: 146 IRMGMGVGSFQNPAVLGFP 164
M +G + PA + FP
Sbjct: 357 ----MAMGMNRPPAFIPFP 371
>AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA binding /
transcription factor | chr4:17414167-17415945 FORWARD
Length = 373
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 55/67 (82%)
Query: 63 VHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSRFW 122
VH+LSE++RR +IN+KM+ LQ+L+PNS+K DKAS+LD AIEYLK LQLQVQ+++M +
Sbjct: 201 VHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGIN 260
Query: 123 MPQMMLP 129
+ + LP
Sbjct: 261 LHPLCLP 267
>AT5G61270.1 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING
FACTOR7); DNA binding / double-stranded DNA binding /
transcription factor | chr5:24638873-24640439 REVERSE
Length = 366
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 7/130 (5%)
Query: 5 ASASVCSLGASNDLSYSSLKTI---TEDMGRMTSENEHAE-DQQVPKPASARAGAKRRPT 60
ASAS ++ ++ S SLKT D R SE + E D+Q + + R+ +R
Sbjct: 108 ASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSNGRRGRA 167
Query: 61 PRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSR 120
+H+ SER+RR +IN++MR LQ LLP + K DK S+LD+ IE+LK LQ QVQ MS+ R
Sbjct: 168 AAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSL--R 225
Query: 121 FWMP-QMMLP 129
+P QMM+P
Sbjct: 226 ANLPQQMMIP 235
>AT3G59060.4 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 444
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 40 AEDQQVPKPASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVL 98
+DQ + +S R+G+ RR VH+LSER+RR +IN++M+ LQ L+P+ + DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295
Query: 99 DNAIEYLKTLQLQVQIMSMGS 119
D AI+YLK+LQ+Q+Q+M MGS
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGS 316
>AT3G59060.3 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 444
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 40 AEDQQVPKPASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVL 98
+DQ + +S R+G+ RR VH+LSER+RR +IN++M+ LQ L+P+ + DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295
Query: 99 DNAIEYLKTLQLQVQIMSMGS 119
D AI+YLK+LQ+Q+Q+M MGS
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGS 316
>AT3G59060.2 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 444
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 40 AEDQQVPKPASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVL 98
+DQ + +S R+G+ RR VH+LSER+RR +IN++M+ LQ L+P+ + DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295
Query: 99 DNAIEYLKTLQLQVQIMSMGS 119
D AI+YLK+LQ+Q+Q+M MGS
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGS 316
>AT3G59060.1 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 442
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 40 AEDQQVPKPASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVL 98
+DQ + +S R+G+ RR VH+LSER+RR +IN++M+ LQ L+P+ + DKAS+L
Sbjct: 236 TDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASIL 295
Query: 99 DNAIEYLKTLQLQVQIMSMGS 119
D AI+YLK+LQ+Q+Q+M MGS
Sbjct: 296 DEAIDYLKSLQMQLQVMWMGS 316
>AT5G61270.2 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING
FACTOR7); DNA binding / double-stranded DNA binding /
transcription factor | chr5:24638873-24640031 REVERSE
Length = 278
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 7/130 (5%)
Query: 5 ASASVCSLGASNDLSYSSLKTI---TEDMGRMTSENEHAE-DQQVPKPASARAGAKRRPT 60
ASAS ++ ++ S SLKT D R SE + E D+Q + + R+ +R
Sbjct: 20 ASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSNGRRGRA 79
Query: 61 PRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSR 120
+H+ SER+RR +IN++MR LQ LLP + K DK S+LD+ IE+LK LQ QVQ MS+ R
Sbjct: 80 AAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSL--R 137
Query: 121 FWMP-QMMLP 129
+P QMM+P
Sbjct: 138 ANLPQQMMIP 147
>AT4G00050.1 | Symbols: UNE10 | UNE10 (unfertilized embryo sac 10);
DNA binding / transcription factor | chr4:17863-19848
FORWARD
Length = 399
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 41 EDQQVPKPAS-ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLD 99
ED++ K + KR +H+ SERKRR KIN++M+ LQ L+PNS K DKAS+LD
Sbjct: 194 EDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLD 253
Query: 100 NAIEYLKTLQLQVQIMS 116
IEYLK LQ QV +MS
Sbjct: 254 EVIEYLKQLQAQVSMMS 270
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14218329-14219887 FORWARD
Length = 340
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 26 ITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQAL 85
IT++ R T E + E+Q + A +KR +H LSER+RR KIN+ M+ LQ L
Sbjct: 245 ITDERKRKTREETNVENQGTEE-ARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQEL 303
Query: 86 LPNSDKVDKASVLDNAIEYLKTLQLQVQ 113
LP K D++S+LD+ IEY+K+LQ Q+Q
Sbjct: 304 LPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23483670-23484889 REVERSE
Length = 297
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 49/66 (74%)
Query: 52 RAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQ 111
R A+R HS++ER RR +I ++M+ LQ L+PN++K DKAS+LD IEY++ LQLQ
Sbjct: 98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQ 157
Query: 112 VQIMSM 117
V+++SM
Sbjct: 158 VKVLSM 163
>AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:15079489-15081606 REVERSE
Length = 310
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 40 AEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLD 99
A+ Q PK AR G P HS++ER RR +I ++M+ LQ L+PN +K DKAS+LD
Sbjct: 122 AQPQTKPK-VRARRGQATDP----HSIAERLRRERIAERMKSLQELVPNGNKTDKASMLD 176
Query: 100 NAIEYLKTLQLQVQIMSM 117
I+Y+K LQLQV+++SM
Sbjct: 177 EIIDYVKFLQLQVKVLSM 194
>AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:10319646-10322177 REVERSE
Length = 350
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQI 114
A+R HS++ER RR +I ++M+ LQ L+PN +K DKAS+LD I+Y+K LQLQV++
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 199
Query: 115 MSM 117
+SM
Sbjct: 200 LSM 202
>AT4G28800.1 | Symbols: | transcription factor |
chr4:14221970-14224075 FORWARD
Length = 445
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 56 KRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIM 115
KR T +H+L+ER+RR KIN+KM+ LQ L+P +K K S LD+AIEY+K+LQ Q+Q M
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM 311
>AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interacting
factor 4); DNA binding / protein binding / transcription
factor | chr2:17887003-17888823 FORWARD
Length = 428
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 49 ASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKT 107
++ R+G+ RR VH+LSER+RR +IN++M+ LQ L+P+ K DKAS+LD AI+YLK+
Sbjct: 246 SNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKS 305
Query: 108 LQLQVQIM 115
LQLQ+Q+M
Sbjct: 306 LQLQLQVM 313
>AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interacting
factor 4); DNA binding / protein binding / transcription
factor | chr2:17887003-17888823 FORWARD
Length = 430
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 49 ASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKT 107
++ R+G+ RR VH+LSER+RR +IN++M+ LQ L+P+ K DKAS+LD AI+YLK+
Sbjct: 246 SNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKS 305
Query: 108 LQLQVQIM 115
LQLQ+Q+M
Sbjct: 306 LQLQLQVM 313
>AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | HFR1 (LONG
HYPOCOTYL IN FAR-RED); DNA binding / protein binding /
transcription factor | chr1:465933-467685 REVERSE
Length = 292
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 11/82 (13%)
Query: 35 SENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDK 94
S ++ +E+ P+ R G+KRR +R K++ KMR+LQ L+PN K DK
Sbjct: 121 SSDDESEEFTREVPSVTRKGSKRR-----------RRDEKMSNKMRKLQQLVPNCHKTDK 169
Query: 95 ASVLDNAIEYLKTLQLQVQIMS 116
SVLD IEY+K LQLQ+Q+MS
Sbjct: 170 VSVLDKTIEYMKNLQLQLQMMS 191
>AT1G10120.1 | Symbols: | DNA binding / transcription factor |
chr1:3304228-3305984 REVERSE
Length = 366
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 22 SLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRE 81
S K D + T E ++ ++ PK A+R HSL+ER RR KI+++MR
Sbjct: 175 SQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRL 234
Query: 82 LQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQIMSM 117
LQ L+P +K+ KA +LD I Y+++LQ QV+ +SM
Sbjct: 235 LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 271
>AT1G27740.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:9654753-9655806 FORWARD
Length = 258
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 34 TSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD 93
+S++E A V A G P SL RKRR KIN++++ LQ L+PN KVD
Sbjct: 152 SSDDEKASVTSVKGKTRATKGTATDP----QSLYARKRREKINERLKTLQNLVPNGTKVD 207
Query: 94 KASVLDNAIEYLKTLQLQVQIMSMGSRFWM 123
+++L+ A+ Y+K LQLQ++++S WM
Sbjct: 208 ISTMLEEAVHYVKFLQLQIKLLS-SDDLWM 236
>AT1G59640.2 | Symbols: ZCW32, BPEP | ZCW32; DNA binding /
transcription factor | chr1:21909635-21911030 REVERSE
Length = 343
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 33 MTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKV 92
+ +E E + Q P A+R HSL+ER RR KI+++M+ LQ L+P +KV
Sbjct: 116 LGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 175
Query: 93 -DKASVLDNAIEYLKTLQLQVQIMSM 117
KA VLD I Y+++LQ QV+ +SM
Sbjct: 176 IGKALVLDEIINYIQSLQRQVEFLSM 201
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:20710764-20712252 REVERSE
Length = 286
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI+++MR LQ L+P DKV KA +LD I Y++TLQ QV+
Sbjct: 138 ARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVE 197
Query: 114 IMSM 117
+SM
Sbjct: 198 FLSM 201
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:20710764-20712252 REVERSE
Length = 286
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI+++MR LQ L+P DKV KA +LD I Y++TLQ QV+
Sbjct: 138 ARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVE 197
Query: 114 IMSM 117
+SM
Sbjct: 198 FLSM 201
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:17334261-17335234 FORWARD
Length = 223
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 24 KTITEDMGRMTSENEHAEDQ------QVPKPASARAGAKRRPTPRVHSLSERKRRHKINK 77
KT D ++S N +++ K +A A R SL RKRR +IN
Sbjct: 97 KTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERIND 156
Query: 78 KMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSRFWM 123
+++ LQ+L+PN KVD +++L++A+ Y+K LQLQ++++S WM
Sbjct: 157 RLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLS-SEDLWM 201
>AT2G14760.1 | Symbols: | basic helix-loop-helix protein / bHLH
protein | chr2:6321840-6323312 REVERSE
Length = 328
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 64 HSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSRFWM 123
SL RKRR +IN+++R LQ L+PN KVD +++L+ A++Y+K LQLQ++++S WM
Sbjct: 248 QSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS-SDDLWM 306
Query: 124 PQMMLPNAM 132
+ N M
Sbjct: 307 YAPIAYNGM 315
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEUB | ZCW32; DNA binding /
transcription factor | chr1:21909464-21911030 REVERSE
Length = 264
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 33 MTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKV 92
+ +E E + Q P A+R HSL+ER RR KI+++M+ LQ L+P +KV
Sbjct: 116 LGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 175
Query: 93 -DKASVLDNAIEYLKTLQLQVQIMSM 117
KA VLD I Y+++LQ QV+ +SM
Sbjct: 176 IGKALVLDEIINYIQSLQRQVEFLSM 201
>AT4G36540.1 | Symbols: BEE2 | BEE2 (BR Enhanced Expression 2); DNA
binding / transcription factor | chr4:17243699-17244965
FORWARD
Length = 304
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 44 QVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAI 102
++ KP A+R HSL+ER RR KI+KKM+ LQ ++P +KV KA +LD I
Sbjct: 132 EIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEII 191
Query: 103 EYLKTLQLQVQIMSM 117
Y+++LQ QV+ +SM
Sbjct: 192 NYVQSLQQQVEFLSM 206
>AT4G36540.2 | Symbols: BEE2 | BEE2 (BR Enhanced Expression 2); DNA
binding / transcription factor | chr4:17243699-17244965
FORWARD
Length = 302
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 44 QVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAI 102
++ KP A+R HSL+ER RR KI+KKM+ LQ ++P +KV KA +LD I
Sbjct: 132 EIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEII 191
Query: 103 EYLKTLQLQVQIMSM 117
Y+++LQ QV+ +SM
Sbjct: 192 NYVQSLQQQVEFLSM 206
>AT1G68240.1 | Symbols: | transcription factor |
chr1:25575179-25576066 REVERSE
Length = 185
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 19 SYSSLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKK 78
++S L + E G +T N+H + + P S R AKR+ + + E+KRR +I K
Sbjct: 29 NHSELNPLQEIFG-VTKNNDHEKHDEEPDEESYRM-AKRQRSMEYRMMMEKKRRKEIKDK 86
Query: 79 MRELQALLPN-SDKVDKASVLDNAIEYLKTLQLQVQIMSMG 118
+ LQ L+PN K D AS L+N IEY+K+L+ QV +MSM
Sbjct: 87 VDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVDVMSMA 127
>AT1G68240.2 | Symbols: | transcription factor |
chr1:25575280-25576066 REVERSE
Length = 174
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 19 SYSSLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKK 78
++S L + E G +T N+H + + P S R AKR+ + + E+KRR +I K
Sbjct: 29 NHSELNPLQEIFG-VTKNNDHEKHDEEPDEESYRM-AKRQRSMEYRMMMEKKRRKEIKDK 86
Query: 79 MRELQALLPN-SDKVDKASVLDNAIEYLKTLQLQVQIMSMG 118
+ LQ L+PN K D AS L+N IEY+K+L+ QV +MSM
Sbjct: 87 VDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVDVMSMA 127
>AT4G33880.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:16239566-16241052 REVERSE
Length = 352
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 51 ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQL 110
A GA P SL RKRR +IN+++R LQ L+PN KVD +++L+ A+ Y+K LQL
Sbjct: 268 ASRGAATDP----QSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQL 323
Query: 111 QVQIMSMGSRFWMPQMMLPNAMQ 133
Q++++S WM + N M
Sbjct: 324 QIKLLS-SDDLWMYAPIAFNGMD 345
>AT4G28815.1 | Symbols: | transcription regulator |
chr4:14228719-14230288 FORWARD
Length = 307
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 49 ASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL 108
A KR +H+L+ER+RR KIN++M+ LQ L+P +K K S+L++ IEY+K+L
Sbjct: 140 ARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSL 199
Query: 109 QLQV 112
++Q+
Sbjct: 200 EMQI 203
>AT1G26260.2 | Symbols: CIB5 | CIB5 (CRYPTOCHROME-INTERACTING
BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription
factor | chr1:9087214-9089035 FORWARD
Length = 390
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 10 CSLGASNDLSYSSLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRV------ 63
C +S S K I +D E++ +D+Q P + + ++++P+ +
Sbjct: 165 CGQTSSKGFSSKKRKRIGKDCEE--EEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIH 222
Query: 64 -----------HSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQ 111
HSL+ER RR KI+++M+ LQ L+P DKV KA +LD I Y+++LQ Q
Sbjct: 223 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 282
Query: 112 VQIMSM 117
++ +SM
Sbjct: 283 IEFLSM 288
>AT1G26260.1 | Symbols: CIB5 | CIB5 (CRYPTOCHROME-INTERACTING
BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription
factor | chr1:9087214-9089035 FORWARD
Length = 390
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 10 CSLGASNDLSYSSLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRV------ 63
C +S S K I +D E++ +D+Q P + + ++++P+ +
Sbjct: 165 CGQTSSKGFSSKKRKRIGKDCEE--EEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIH 222
Query: 64 -----------HSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQ 111
HSL+ER RR KI+++M+ LQ L+P DKV KA +LD I Y+++LQ Q
Sbjct: 223 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 282
Query: 112 VQIMSM 117
++ +SM
Sbjct: 283 IEFLSM 288
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF
GLABRA 3); DNA binding / transcription factor |
chr1:23599809-23602734 FORWARD
Length = 596
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 40/50 (80%)
Query: 64 HSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQ 113
H+LSE+KRR K+N++ L++++P+ K+DK S+LD+ IEYL+ LQ +VQ
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQ 455
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF
GLABRA 3); DNA binding / transcription factor |
chr1:23599809-23602734 FORWARD
Length = 596
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 40/50 (80%)
Query: 64 HSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQ 113
H+LSE+KRR K+N++ L++++P+ K+DK S+LD+ IEYL+ LQ +VQ
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQ 455
>AT1G26260.3 | Symbols: CIB5 | CIB5 (CRYPTOCHROME-INTERACTING
BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription
factor | chr1:9087214-9089035 FORWARD
Length = 339
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 10 CSLGASNDLSYSSLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRV------ 63
C +S S K I +D E++ +D+Q P + + ++++P+ +
Sbjct: 114 CGQTSSKGFSSKKRKRIGKDCEE--EEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIH 171
Query: 64 -----------HSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQ 111
HSL+ER RR KI+++M+ LQ L+P DKV KA +LD I Y+++LQ Q
Sbjct: 172 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 231
Query: 112 VQIMSM 117
++ +SM
Sbjct: 232 IEFLSM 237
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:7953022-7954446 REVERSE
Length = 337
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI+KKM+ LQ ++P +KV KA +LD I Y++ LQ QV+
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 114 IMSMGSRFWMPQMML 128
+SM P++ L
Sbjct: 247 FLSMKLAVLNPELEL 261
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:7953022-7954446 REVERSE
Length = 335
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI+KKM+ LQ ++P +KV KA +LD I Y++ LQ QV+
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 114 IMSMGSRFWMPQMML 128
+SM P++ L
Sbjct: 247 FLSMKLAVLNPELEL 261
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:25915620-25917675 FORWARD
Length = 485
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 46 PKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKV-DKASVLDNAIEY 104
PK A+R HSL+ER RR KI+++M+ LQ L+P +KV KA +LD I Y
Sbjct: 295 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINY 354
Query: 105 LKTLQLQVQIMSMGSRFWMPQM 126
+++LQ QV+ +SM PQM
Sbjct: 355 VQSLQRQVEFLSMKLATVNPQM 376
>AT2G46510.1 | Symbols: ATAIB | ATAIB (ABA-INDUCIBLE BHLH-TYPE
TRANSCRIPTION FACTOR); DNA binding / transcription
factor | chr2:19091187-19092887 REVERSE
Length = 566
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 42 DQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNA 101
D++ P+ R A R P H +ER+RR K+N++ L++++PN K+DKAS+L +A
Sbjct: 375 DEKRPRK-RGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDA 433
Query: 102 IEYLKTLQLQVQIM 115
I Y+K LQ +V+IM
Sbjct: 434 ISYIKELQEKVKIM 447
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:25915620-25917675 FORWARD
Length = 486
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 46 PKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKV-DKASVLDNAIEY 104
PK A+R HSL+ER RR KI+++M+ LQ L+P +KV KA +LD I Y
Sbjct: 296 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINY 355
Query: 105 LKTLQLQVQIMSMGSRFWMPQM 126
+++LQ QV+ +SM PQM
Sbjct: 356 VQSLQRQVEFLSMKLATVNPQM 377
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:25915620-25917675 FORWARD
Length = 486
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 46 PKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKV-DKASVLDNAIEY 104
PK A+R HSL+ER RR KI+++M+ LQ L+P +KV KA +LD I Y
Sbjct: 296 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINY 355
Query: 105 LKTLQLQVQIMSMGSRFWMPQM 126
+++LQ QV+ +SM PQM
Sbjct: 356 VQSLQRQVEFLSMKLATVNPQM 377
>AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:17621542-17624635 FORWARD
Length = 327
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KIN +M+ LQ L+P DK+ A VLD I +++TLQ QV+
Sbjct: 187 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVE 246
Query: 114 IMSM 117
++SM
Sbjct: 247 MLSM 250
>AT2G22770.1 | Symbols: NAI1 | NAI1; DNA binding / transcription
factor | chr2:9684858-9686321 FORWARD
Length = 320
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 37 NEHAEDQQV--PKPASARAGAKRRP-TPRVHSLSERKRRHKINKKMRELQALLPNSDKVD 93
N+ + DQ+V + G +R P + H L+ERKRR K+N+++ L ALLP K D
Sbjct: 103 NQVSMDQKVGSKRKDCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTD 162
Query: 94 KASVLDNAIEYLKTLQLQVQ 113
KA+VL++AI++LK LQ +V+
Sbjct: 163 KATVLEDAIKHLKQLQERVK 182
>AT4G34530.1 | Symbols: CIB1 | CIB1 (CRYPTOCHROME-INTERACTING
BASIC-HELIX-LOOP-HELIX 1); DNA binding / transcription
factor | chr4:16498466-16499946 FORWARD
Length = 335
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 43 QQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNA 101
+++ K A+R HS++ER RR KI+++M+ LQ L+P DK+ KA +LD
Sbjct: 162 KELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEI 221
Query: 102 IEYLKTLQLQVQIMSM 117
I Y+++LQ Q++ +SM
Sbjct: 222 INYVQSLQRQIEFLSM 237
>AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:21408034-21411321 REVERSE
Length = 379
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KIN +M+ LQ L+P DK+ A VLD I ++++LQ QV+
Sbjct: 206 ARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQVE 265
Query: 114 IMSM 117
++SM
Sbjct: 266 MLSM 269
>AT5G37800.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:15036197-15037574 FORWARD
Length = 307
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 40 AEDQQVPKPASARAGAKRRPTPRV-----HSLSERKRRHKINKKMRELQALLPNSDKVDK 94
E+ Q+ K S+ K +P SL+ + RR +I+++++ LQ L+PN KVD
Sbjct: 183 GENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDL 242
Query: 95 ASVLDNAIEYLKTLQLQVQIMSMGSRFWMPQ 125
++L+ AI Y+K LQ+QV++++ FW Q
Sbjct: 243 VTMLEKAIGYVKFLQVQVKVLA-ADEFWPAQ 272
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:25133117-25134600 REVERSE
Length = 281
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI++KM LQ ++P +K + KA VLD I Y+++LQ QV+
Sbjct: 155 ARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVE 214
Query: 114 IMSM 117
+SM
Sbjct: 215 FLSM 218
>AT1G66470.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:24795326-24796598 FORWARD
Length = 298
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 40 AEDQQVPKPASARAGAKRRPTPRV-----HSLSERKRRHKINKKMRELQALLPNSDKVDK 94
E Q K S+ K +P P SL+ + RR +I+++++ LQ L+PN KVD
Sbjct: 177 GESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDL 236
Query: 95 ASVLDNAIEYLKTLQLQVQIMSMGSRFWMPQ 125
++L+ AI Y+K LQ+QV++++ FW Q
Sbjct: 237 VTMLEKAISYVKFLQVQVKVLAT-DEFWPAQ 266
>AT4G28811.1 | Symbols: | transcription regulator |
chr4:14225335-14227840 FORWARD
Length = 544
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 79/144 (54%), Gaps = 13/144 (9%)
Query: 26 ITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQAL 85
ITED R E AE Q + A KR +H+LSER+RR +IN++M+ LQ L
Sbjct: 328 ITEDKKR---EETIAEIQGTEE-AHGSTSRKRSRAADMHNLSERRRRERINERMKTLQEL 383
Query: 86 LPNSDKVDKASVLDNAIEYLKTLQLQVQIMSMGSRFWMPQMMLPNAMQQIHNLAHFSPMG 145
LP K DK S+L++ IEY+K+LQLQ+Q+MSMG P M N Q + ++A
Sbjct: 384 LPRCRKTDKVSMLEDVIEYVKSLQLQIQMMSMGHGMMPPMMHEGNTQQFMPHMA------ 437
Query: 146 IRMGMGVGSFQNPAVLGFPARILP 169
MGM G + P + FP + P
Sbjct: 438 --MGMK-GMNRPPPFVPFPGKTFP 458
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:2341188-2343288 REVERSE
Length = 456
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI+++M+ LQ L+P +KV KA +LD I Y+++LQ QV+
Sbjct: 260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 319
Query: 114 IMSM 117
+SM
Sbjct: 320 FLSM 323
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:19684160-19686871 FORWARD
Length = 498
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI ++M+ LQ L+P +KV KA +LD I Y+++LQ QV+
Sbjct: 303 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 362
Query: 114 IMSM 117
+SM
Sbjct: 363 FLSM 366
>AT5G41315.1 | Symbols: GL3, MYC6.2 | GL3 (GLABROUS 3); protein
binding / transcription factor | chr5:16529457-16532866
FORWARD
Length = 637
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 39/50 (78%)
Query: 64 HSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQ 113
H++ E+KRR K+N++ L+ ++P+ +K+DK S+LD+ IEYL+ L+ +VQ
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQ 491
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:5847513-5849500 FORWARD
Length = 262
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 52 RAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQL 110
R AKR S++ER RR +I+ ++R+LQ L+PN DK + A +L+ A+EY+K LQ
Sbjct: 183 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQR 242
Query: 111 QVQIMS 116
Q+Q ++
Sbjct: 243 QIQELT 248
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:8528933-8530655 REVERSE
Length = 371
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVD-KASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KI+++M LQ L+P +++ KA +LD I Y+++LQ QV+
Sbjct: 193 ARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVE 252
Query: 114 IMSM 117
+SM
Sbjct: 253 FLSM 256
>AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like
protein 2); DNA binding / transcription factor |
chr1:25941804-25943599 FORWARD
Length = 311
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 64 HSLSERKRRHKINKKMRELQALLPNSD-KVDKASVLDNAIEYLKTLQLQVQIMSMGSRFW 122
HS++E++RR KIN++ + L+ L+PNS+ K D AS L I+Y++ LQ +VQ W
Sbjct: 50 HSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQKYEGSYPGW 109
Query: 123 --MPQMMLP--NAMQQIHNLAHFSPMGIRMGMG-----VGSFQNPAVLGFPARILPMQMS 173
P + P N ++ +L + P+ I G G G F++ V PA I Q+
Sbjct: 110 SQEPTKLTPWRNNHWRVQSLGNH-PVAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIP 168
Query: 174 V 174
+
Sbjct: 169 I 169
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:13040092-13041907 FORWARD
Length = 259
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 51 ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQ 109
R AKR S++ER RR +I+ ++R LQ L+PN DK + A +L+ A+EY+K LQ
Sbjct: 179 CRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQ 238
Query: 110 LQVQIMS 116
Q+Q ++
Sbjct: 239 SQIQELT 245
>AT2G43140.1 | Symbols: | DNA binding / transcription factor |
chr2:17932376-17935639 REVERSE
Length = 297
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 51 ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQ 109
RA AKR S++ER+RR +I+ K+++LQ L+PN DK A +LD A+E++K LQ
Sbjct: 231 CRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQ 290
Query: 110 LQVQI 114
QV++
Sbjct: 291 HQVEV 295
>AT5G46760.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:18974231-18976009 FORWARD
Length = 592
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 51 ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQL 110
R A R P H +ER+RR K+N++ L+A++PN K+DKAS+L +AI Y+ L+
Sbjct: 403 GRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKS 462
Query: 111 QVQ 113
++Q
Sbjct: 463 KLQ 465
>AT4G17880.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:9933702-9935471 REVERSE
Length = 589
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 51 ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQL 110
R A R P H +ER+RR K+N++ L+A++PN K+DKAS+L +AI Y+ L+
Sbjct: 404 GRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKS 463
Query: 111 QVQ 113
++Q
Sbjct: 464 KLQ 466
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14644108-14647449 FORWARD
Length = 225
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL----- 108
GA P + +SER RR K+N+++ L++++PN K+DKASV+ ++I+Y++ L
Sbjct: 45 GAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEK 104
Query: 109 QLQVQIMSMGSRFWMPQMMLPNAMQQIHNLAHF 141
L+ +I + SR +L N M + H+
Sbjct: 105 TLEAEIRELESR----STLLENPMDYSTRVQHY 133
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:17611428-17613163 REVERSE
Length = 359
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 45 VPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIE 103
VP A+ G P S++ER RR +I+++MR+LQ L+PN DK + + +LD A++
Sbjct: 275 VPCKIRAKRGCATHP----RSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVD 330
Query: 104 YLKTLQLQVQIMS 116
Y+K LQ Q +I++
Sbjct: 331 YIKDLQRQYKILN 343
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
MYC2; DNA binding / transcription activator/
transcription factor | chr1:11799042-11800913 REVERSE
Length = 623
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 51 ARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQL 110
R A R P H +ER+RR K+N++ L+A++PN K+DKAS+L +AI Y+ L+
Sbjct: 440 GRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKS 499
Query: 111 QV 112
+V
Sbjct: 500 KV 501
>AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:8880515-8882018 REVERSE
Length = 223
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 40 AEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVL 98
++ Q PK AKR HSL+ER RR KIN++++ LQ L+P K + A +L
Sbjct: 92 GDETQKPKDV-VHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVML 150
Query: 99 DNAIEYLKTLQLQVQIMSM 117
D I+Y+++LQ Q++ +SM
Sbjct: 151 DVIIDYVRSLQNQIEFLSM 169
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:9267599-9269002 FORWARD
Length = 467
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 35 SENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDK 94
E + D+Q P+ R A R H +ER+RR K+N++ L+A++PN K+DK
Sbjct: 293 DETLYLTDEQKPRK-RGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDK 351
Query: 95 ASVLDNAIEYLKTLQLQVQIM 115
AS+L +AI Y+ +Q ++++
Sbjct: 352 ASLLADAITYITDMQKKIRVY 372
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:18943802-18945613 REVERSE
Length = 379
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSD-KVDKASVLDNAIEYLKTLQLQVQ 113
AKR S++ER RR KI+++MR+LQ L+PN D + + A +LD A++Y+K LQ QV+
Sbjct: 306 AKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVK 365
Query: 114 IM 115
+
Sbjct: 366 AL 367
>AT1G18400.1 | Symbols: BEE1 | BEE1 (BR Enhanced Expression 1);
transcription factor | chr1:6331464-6333576 FORWARD
Length = 260
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQLQVQ 113
A+R HSL+ER RR KIN+++R LQ ++P K + A++LD I Y+++LQ QV+
Sbjct: 147 ARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVE 206
Query: 114 IMSM 117
+SM
Sbjct: 207 FLSM 210
>AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14644108-14647449 FORWARD
Length = 254
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL----- 108
GA P + +SER RR K+N+++ L++++PN K+DKASV+ ++I+Y++ L
Sbjct: 45 GAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEK 104
Query: 109 QLQVQIMSMGSRFWMPQMMLPNAMQQIH-NLA--HFSPMGIRMGMGVGSFQ----NPAVL 161
L+ +I + SR +L N ++ N A H M F+ + V
Sbjct: 105 TLEAEIRELESR----STLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQ 160
Query: 162 GFPARILPMQMS 173
+P +L M+++
Sbjct: 161 HYPIEVLEMKVT 172
>AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14644108-14645505 FORWARD
Length = 263
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL----- 108
GA P + +SER RR K+N+++ L++++PN K+DKASV+ ++I+Y++ L
Sbjct: 45 GAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEK 104
Query: 109 QLQVQIMSMGSRFWMPQMMLPNAMQQIH-NLA--HFSPMGIRMGMGVGSFQ----NPAVL 161
L+ +I + SR +L N ++ N A H M F+ + V
Sbjct: 105 TLEAEIRELESR----STLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQ 160
Query: 162 GFPARILPMQMS 173
+P +L M+++
Sbjct: 161 HYPIEVLEMKVT 172
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:109595-111367 FORWARD
Length = 590
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 47 KPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLK 106
+PA+ RA A H +ER+RR K+N++ L++++PN K+DKAS+L +A+ Y+
Sbjct: 423 RPANGRAEALN------HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYIN 476
Query: 107 TLQLQVQIM 115
L ++++M
Sbjct: 477 ELHAKLKVM 485
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:109595-111367 FORWARD
Length = 590
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 47 KPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLK 106
+PA+ RA A H +ER+RR K+N++ L++++PN K+DKAS+L +A+ Y+
Sbjct: 423 RPANGRAEALN------HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYIN 476
Query: 107 TLQLQVQIM 115
L ++++M
Sbjct: 477 ELHAKLKVM 485
>AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:16791098-16792027 FORWARD
Length = 254
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 62 RVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQ 109
R H L+E++RR +IN + L+ L+PNSDK+DKA++L IE +K L+
Sbjct: 65 RSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELK 112
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:9678012-9679165 FORWARD
Length = 295
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 64 HSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIM 115
H L+ERKRR K+++K L ALLP K DK ++LD+AI +K LQ Q++ +
Sbjct: 120 HVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTL 171
>AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
transcription factor | chr5:2606655-2609571 REVERSE
Length = 529
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 60 TPRV-HSLSERKRRHKINKKMRELQALLPNSD-KVDKASVLDNAIEYLKTLQLQVQIMSM 117
TPR HS +E++RR KIN + + L+ L+PNSD K DKAS L IEY++ LQ +
Sbjct: 276 TPRSKHSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVT 335
Query: 118 GSRFW 122
+ W
Sbjct: 336 SYQGW 340
>AT5G08130.3 | Symbols: | BIM1; DNA binding / protein binding /
transcription factor | chr5:2606655-2608652 REVERSE
Length = 408
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 60 TPRV-HSLSERKRRHKINKKMRELQALLPNSD-KVDKASVLDNAIEYLKTLQLQVQIMSM 117
TPR HS +E++RR KIN + + L+ L+PNSD K DKAS L IEY++ LQ +
Sbjct: 156 TPRSKHSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVT 215
Query: 118 GSRFW 122
+ W
Sbjct: 216 SYQGW 220
>AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
transcription factor | chr5:2606655-2608652 REVERSE
Length = 409
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 60 TPRV-HSLSERKRRHKINKKMRELQALLPNSD-KVDKASVLDNAIEYLKTLQLQVQIMSM 117
TPR HS +E++RR KIN + + L+ L+PNSD K DKAS L IEY++ LQ +
Sbjct: 156 TPRSKHSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVT 215
Query: 118 GSRFW 122
+ W
Sbjct: 216 SYQGW 220
>AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14644108-14645168 FORWARD
Length = 184
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL----- 108
GA P + +SER RR K+N+++ L++++PN K+DKASV+ ++I+Y++ L
Sbjct: 45 GAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEK 104
Query: 109 QLQVQIMSMGSR 120
L+ +I + SR
Sbjct: 105 TLEAEIRELESR 116
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:9672145-9673624 FORWARD
Length = 304
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 41 EDQQVPKPASARAGAKRRPTPRV------------HSLSERKRRHKINKKMRELQALLPN 88
+D+++ P +A R T R H L+ERKRR K+ ++ L AL+P
Sbjct: 92 KDEEIGLPEHKKAELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPG 151
Query: 89 SDKVDKASVLDNAIEYLKTLQLQV 112
K+DKASVL +AI+++K LQ V
Sbjct: 152 LKKMDKASVLGDAIKHIKYLQESV 175
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:9672145-9673624 FORWARD
Length = 305
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 41 EDQQVPKPASARAGAKRRPTPRV------------HSLSERKRRHKINKKMRELQALLPN 88
+D+++ P +A R T R H L+ERKRR K+ ++ L AL+P
Sbjct: 92 KDEEIGLPEHKKAELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPG 151
Query: 89 SDKVDKASVLDNAIEYLKTLQLQV 112
K+DKASVL +AI+++K LQ V
Sbjct: 152 LKKMDKASVLGDAIKHIKYLQESV 175
>AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 |
FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding /
transcription factor | chr2:12004713-12005908 FORWARD
Length = 318
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 22 SLKTITEDMGRMTSENEHAEDQQVPKPASARA----GAKRRPTPRVHSL-SERKRRHKIN 76
S ++ D R E E ED +SA G ++ T R +L SER+RR ++
Sbjct: 86 SFRSFDGDSVRAGGE-EDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMK 144
Query: 77 KKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQ 113
K+ L++L+PN K+DKAS++ +A+ Y++ LQ Q +
Sbjct: 145 DKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAK 181
>AT1G73830.1 | Symbols: BEE3 | BEE3 (BR ENHANCED EXPRESSION 3); DNA
binding / transcription factor | chr1:27760027-27761346
FORWARD
Length = 261
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQLQVQ 113
A+R HS++ER RR KIN++++ LQ ++P K + A++LD I Y+++LQ QV+
Sbjct: 149 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 208
Query: 114 IMSM 117
+SM
Sbjct: 209 FLSM 212
>AT5G67110.2 | Symbols: ALC | ALC (ALCATRAZ); DNA binding /
transcription factor | chr5:26785684-26786338 REVERSE
Length = 150
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 49 ASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKA 95
A R KR + H+LSE+KRR KIN+KM+ LQ L+PNS+KV+++
Sbjct: 83 AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKVNQS 129
>AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like
protein 3); DNA binding / transcription factor |
chr5:15559083-15560911 FORWARD
Length = 298
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 VPKPASARAGAKRRPTPRV-HSLSERKRRHKINKKMRELQALLP---NSDKVDKASVLDN 100
+P + G + R + R HS +E++RR KIN++ + L ++P N K DKAS L
Sbjct: 18 LPSRNDSSTGRRNRNSCRSKHSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLE 77
Query: 101 AIEYLKTLQLQVQIMSMGSRFWM--PQMMLP 129
IEY+ LQ +V + + W P ++P
Sbjct: 78 VIEYIHFLQEKVHMYEDSHQMWYQSPTKLIP 108
>AT4G02590.2 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12);
DNA binding / transcription factor |
chr4:1137968-1140306 REVERSE
Length = 310
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 39 HAEDQQVPKPASARAGAKRRPTPRV--------HSLSERKRRHKINKKMRELQALLPNSD 90
H + Q P P++ RP R HS++ER RR +I +++R LQ L+P +
Sbjct: 124 HGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVN 183
Query: 91 KVDKASVLDNAIEYLKTLQLQVQIMSM 117
K D+A+++D ++Y+K L+LQV+++SM
Sbjct: 184 KTDRAAMIDEIVDYVKFLRLQVKVLSM 210
>AT4G02590.1 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12);
DNA binding / transcription factor |
chr4:1137968-1140306 REVERSE
Length = 310
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 39 HAEDQQVPKPASARAGAKRRPTPRV--------HSLSERKRRHKINKKMRELQALLPNSD 90
H + Q P P++ RP R HS++ER RR +I +++R LQ L+P +
Sbjct: 124 HGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVN 183
Query: 91 KVDKASVLDNAIEYLKTLQLQVQIMSM 117
K D+A+++D ++Y+K L+LQV+++SM
Sbjct: 184 KTDRAAMIDEIVDYVKFLRLQVKVLSM 210
>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | IND (INDEHISCENT);
DNA binding / transcription factor | chr4:42601-43197
REVERSE
Length = 198
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 45 VPKPASARAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEY 104
VPKP P ++ R+RR +I++K+R L+ ++P K+D AS+LD AI Y
Sbjct: 108 VPKPNRRNVRISDDP----QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRY 163
Query: 105 LKTLQLQVQIMSMGSRFWMPQMMLPNAMQQIHN 137
K L+ QV+I+ S+ P M P+ + HN
Sbjct: 164 TKFLKRQVRILQPHSQIGAP-MANPSYLCYYHN 195
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:7507720-7508841 FORWARD
Length = 373
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 65 SLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQIM 115
+++ R+RR +I++K+R LQ L+P K+D AS+LD A YLK L+ QV+ +
Sbjct: 281 TVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKAL 331
>AT4G02590.3 | Symbols: UNE12 | UNE12 (unfertilized embryo sac 12);
DNA binding / transcription factor |
chr4:1137968-1140117 REVERSE
Length = 247
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 39 HAEDQQVPKPASARAGAKRRPTPRV--------HSLSERKRRHKINKKMRELQALLPNSD 90
H + Q P P++ RP R HS++ER RR +I +++R LQ L+P +
Sbjct: 61 HGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVN 120
Query: 91 KVDKASVLDNAIEYLKTLQLQVQIMSM 117
K D+A+++D ++Y+K L+LQV+++SM
Sbjct: 121 KTDRAAMIDEIVDYVKFLRLQVKVLSM 147
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23152361-23153293 FORWARD
Length = 226
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQ 111
GA P + + +SER RR K+N+++ L++++PN K+DKAS++ +AI Y++ LQ +
Sbjct: 47 GAASSPASK-NIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYE 103
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23152361-23154556 FORWARD
Length = 219
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQ 111
GA P + + +SER RR K+N+++ L++++PN K+DKAS++ +AI Y++ LQ +
Sbjct: 47 GAASSPASK-NIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYE 103
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23152361-23154872 FORWARD
Length = 247
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 54 GAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQ 111
GA P + + +SER RR K+N+++ L++++PN K+DKAS++ +AI Y++ LQ +
Sbjct: 46 GAASSPASK-NIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYE 102
>AT4G38070.1 | Symbols: | bHLH family protein |
chr4:17876535-17882569 FORWARD
Length = 1513
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 16 NDLSYSSLKTITEDMGRMTSENEHAEDQQVPKPASARAGAKRRPTPRVHSLSERKRRHKI 75
N +YS+ + G TS + V KP S + + HS +ER+RR +I
Sbjct: 1307 NPTAYSTTMGRSFFAGAATSSKLFSRGFSVTKPKSKTE--SKEVAAKKHSDAERRRRLRI 1364
Query: 76 NKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQVQ 113
N + L+ +LPN K DKASVL + Y L+ VQ
Sbjct: 1365 NSQFATLRTILPNLVKQDKASVLGETVRYFNELKKMVQ 1402
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:704279-706457 REVERSE
Length = 302
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 47/66 (71%)
Query: 52 RAGAKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQLQ 111
R A+R HS++ER RR +I +++R LQ L+P +K D+A+++D ++Y+K L+LQ
Sbjct: 143 RVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQ 202
Query: 112 VQIMSM 117
V+++SM
Sbjct: 203 VKVLSM 208
>AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:1744843-1747427 FORWARD
Length = 362
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 55 AKRRPTPRVHSLSERKRRHKINKKMRELQALLPNSDK-VDKASVLDNAIEYLKTLQLQVQ 113
AKR S++ER+RR +I+ K+++LQ L+PN DK + +LD A++++K LQ Q+Q
Sbjct: 285 AKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQ 344
>AT5G67110.3 | Symbols: ALC | ALC (ALCATRAZ); DNA binding /
transcription factor | chr5:26785332-26786338 REVERSE
Length = 188
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 64 HSLSERKRRHKINKKMRELQALLPN-SDKVDKASVLDNAIEYLKTLQLQVQIMSMGSRFW 122
H S K+R+ + R + A N S+K DKAS+LD AIEYLK LQLQVQ +++ +
Sbjct: 78 HKRSGAKQRNSLK---RNIDAQFHNLSEKTDKASMLDEAIEYLKQLQLQVQTLAVMNGLG 134
Query: 123 MPQMMLP 129
+ M LP
Sbjct: 135 LNPMRLP 141
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF
EXPRESSION 1); DNA binding / transcription activator/
transcription factor | chr3:9832953-9834790 REVERSE
Length = 494
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%)
Query: 61 PRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL 108
P + ++ER+RR K+N ++ L++++P K+D+AS+L +AI+YLK L
Sbjct: 305 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 352
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF
EXPRESSION 1); DNA binding / transcription activator/
transcription factor | chr3:9832953-9834790 REVERSE
Length = 494
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%)
Query: 61 PRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL 108
P + ++ER+RR K+N ++ L++++P K+D+AS+L +AI+YLK L
Sbjct: 305 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 352
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF
EXPRESSION 1); DNA binding / transcription activator/
transcription factor | chr3:9832953-9834790 REVERSE
Length = 494
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%)
Query: 61 PRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL 108
P + ++ER+RR K+N ++ L++++P K+D+AS+L +AI+YLK L
Sbjct: 305 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 352
>AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:17796362-17797647 REVERSE
Length = 328
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 52 RAGAKR-RPTPR------VHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEY 104
R G KR +P R H ++ERKRR K+ ++ L AL+P K+DKASVL +A+++
Sbjct: 134 RKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKH 193
Query: 105 LKTLQLQV 112
+K LQ +V
Sbjct: 194 IKYLQERV 201
>AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA binding
/ transcription factor | chr2:7331721-7334077 FORWARD
Length = 571
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 34/44 (77%)
Query: 66 LSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTLQ 109
++ER+RR K+N ++ L++L+P K+D+AS+L +AI Y+K LQ
Sbjct: 317 MAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQ 360
>AT1G12860.1 | Symbols: SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding
/ transcription factor | chr1:4382223-4386392 FORWARD
Length = 828
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%)
Query: 61 PRVHSLSERKRRHKINKKMRELQALLPNSDKVDKASVLDNAIEYLKTL 108
P + ++ER+RR K+N ++ L++++P K+D+AS+L +AI+YLK L
Sbjct: 643 PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 690