Jatropha Genome Database

JcCA0310021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310021.10 + phase: 1 /partial
         (53 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46980.2 | Symbols:  | unknown protein | chr2:19299868-193034...    54   1e-08

>AT2G46980.2 | Symbols:  | unknown protein | chr2:19299868-19303429
           REVERSE
          Length = 793

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 2   SHQKLVMKAEEVMETQLNDAHRRITAVHKTAREKMLQLRRVISDCL 47
           SHQKL+   E  +ET+L+DA +RI +V+K+AR KMLQL+ ++++CL
Sbjct: 745 SHQKLIAHFEGGIETKLDDATKRIDSVNKSARGKMLQLKMIVAECL 790