Jatropha Genome Database

JcCA0309961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309961.30 - phase: 2 /pseudo/partial
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62990.1 | Symbols: KNAT7, IXR11 | KNAT7 (KNOTTED-LIKE HOMEOB...    74   2e-14
AT5G25220.1 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GEN...    62   9e-11
AT5G25220.2 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GEN...    62   1e-10
AT4G32040.1 | Symbols: KNAT5 | KNAT5 (KNOTTED1-LIKE HOMEOBOX GEN...    59   6e-10
AT5G11060.1 | Symbols: KNAT4 | KNAT4 (KNOTTED1-LIKE HOMEOBOX GEN...    59   8e-10

>AT1G62990.1 | Symbols: KNAT7, IXR11 | KNAT7 (KNOTTED-LIKE HOMEOBOX
           OF ARABIDOPSIS THALIANA 7); DNA binding / transcription
           activator/ transcription factor | chr1:23337468-23340348
           FORWARD
          Length = 291

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 40/49 (81%), Gaps = 3/49 (6%)

Query: 48  LQMDFSLDQPSVD---GHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           L MDFS D   VD   GHD+ GFGPL+PTESERSLMERVRQELK+ELKQ
Sbjct: 153 LPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 201


>AT5G25220.1 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE
           3); transcription activator/ transcription factor |
           chr5:8736208-8738115 FORWARD
          Length = 431

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 31/33 (93%)

Query: 61  GHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           G D++GFGPLIPTESERSLMERVRQELK ELKQ
Sbjct: 297 GLDVLGFGPLIPTESERSLMERVRQELKHELKQ 329


>AT5G25220.2 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE
           3); transcription activator/ transcription factor |
           chr5:8736208-8738087 FORWARD
          Length = 419

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 31/33 (93%)

Query: 61  GHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           G D++GFGPLIPTESERSLMERVRQELK ELKQ
Sbjct: 297 GLDVLGFGPLIPTESERSLMERVRQELKHELKQ 329


>AT4G32040.1 | Symbols: KNAT5 | KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE
           5); transcription activator/ transcription factor |
           chr4:15494127-15496009 FORWARD
          Length = 383

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 46  NCLQMDFSLDQPSVDGHD-LMGFGPLIPTESERSLMERVRQELKIELKQ 93
           N ++ + ++   S+DG D LMGFGPL+PTE ERSLMERV++ELK ELKQ
Sbjct: 240 NQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQ 288


>AT5G11060.1 | Symbols: KNAT4 | KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE
           4); transcription activator/ transcription factor |
           chr5:3510408-3512967 FORWARD
          Length = 393

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 36/46 (78%), Gaps = 3/46 (6%)

Query: 48  LQMDFSLDQPSVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           ++ D  L   S+DG   +GFGPL+PTESERSLMERVRQELK ELKQ
Sbjct: 251 VESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHELKQ 293