Jatropha Genome Database

JcCA0309871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309871.10 + phase: 0 
         (70 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50335.1 | Symbols:  | unknown protein | chr5:20489391-204896...    68   1e-12

>AT5G50335.1 | Symbols:  | unknown protein |
          chr5:20489391-20489615 REVERSE
          Length = 74

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 45/51 (88%), Gaps = 4/51 (7%)

Query: 24 NQYQQKQIQ----CNKGKTCKFKRSSSNLEDDGASSAIFLLACIACTTPSY 70
          +++Q+K++Q    CNK K+C+FKRS+SNL++DGASSAIFLLACIAC++ SY
Sbjct: 22 DRHQKKKMQSITNCNKEKSCRFKRSTSNLDNDGASSAIFLLACIACSSFSY 72