Jatropha Genome Database

JcCA0309861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.20 - phase: 0 
         (519 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06350.1 | Symbols: EMB3004, MEE32 | MEE32 (MATERNAL EFFECT E...   493   e-139

>AT3G06350.1 | Symbols: EMB3004, MEE32 | MEE32 (MATERNAL EFFECT
           EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or
           NADPH binding / binding / catalytic/ shikimate
           5-dehydrogenase | chr3:1924536-1927701 REVERSE
          Length = 603

 Score =  493 bits (1269), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/517 (47%), Positives = 346/517 (66%), Gaps = 2/517 (0%)

Query: 1   MGHVGLLNSSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETIL 60
           +G   ++ + +++CAP+MA S+++MV +   A   GAD+VE+RLD++K+F P +DL+TI+
Sbjct: 84  IGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTII 143

Query: 61  RKKPLPVIIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTH 120
           +K PLP +  YR K EGG +EGDE+ R +VLRLA ELGADYID+EL+VAS+ I  +    
Sbjct: 144 KKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKK 203

Query: 121 QTDSKIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQ 180
               K+IVS +    TP  E+L  LV  +Q  GADI+K+ + A +I ++ R+F++   +Q
Sbjct: 204 PGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQ 263

Query: 181 VPLIAYSVGERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDT 238
           VP I   +GERGL+S+IL  KFGG L +G+++ + +  PG PT+  L + Y   RI  DT
Sbjct: 264 VPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDT 323

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFP 298
           KV+G+I KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS D+AGFS   P
Sbjct: 324 KVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIP 383

Query: 299 YKEAVVEFCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYING 358
           +KEA ++ CDEV PLAKSIGAVNTI+RR SDGKL+GYNTDC  SI+AIED L+  G  + 
Sbjct: 384 HKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSS 443

Query: 359 RTSFSSSLAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPF 418
             S SS LA +                  K +GA+++I +  +ER   LA A+ G+A   
Sbjct: 444 VPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSL 503

Query: 419 KNLVHFRPETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEA 478
            +L ++ PE   +LAN T +GM PN E  P++++ L  Y LVFDAVYTPR TRLL+EAE 
Sbjct: 504 TDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEE 563

Query: 479 AGAIIVSGVEMFLRQAIGQFNLFTGREAPEDFMREIV 515
           +GAI VSG EMF+RQA  QF +FTG  AP++   +I+
Sbjct: 564 SGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 600