Jatropha Genome Database

JcCA0309861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.10 + phase: 0 
         (214 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07870.1 | Symbols:  | F-box family protein | chr3:2510871-25...    49   2e-06

>AT3G07870.1 | Symbols:  | F-box family protein |
           chr3:2510871-2512124 FORWARD
          Length = 417

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 28  FQHLPDSIIVEILSRLPSEQLSNCQLVCRKFRDLTSTPYFREIHSVKRASPIVLVQYFNP 87
            + LP+ II +I SRLP   ++    VCR +R + +        S     P +L+   +P
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSP 84

Query: 88  ---GIHDKDMQVYLLDEKTKDENQKLNCTGRFFMYCLILCSCNGLI-LFDS--RCKLCIN 141
              G+H  D+       KTK    +   +   F    ++ SCNGL+ L DS     L + 
Sbjct: 85  IRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFD---VVGSCNGLLCLSDSLYNDSLYLY 141

Query: 142 NPLTA---ELIFLKNPYQSGGFGCGFYFHTSEKEYRLL 176
           NP T    EL    N Y       GF FH   KEY++L
Sbjct: 142 NPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVL 179