Jatropha Genome Database

JcCA0309351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309351.30 + phase: 0 /partial/short
         (43 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21580.2 | Symbols:  | 40S ribosomal protein S25 (RPS25B) | c...    70   3e-13
AT2G21580.1 | Symbols:  | 40S ribosomal protein S25 (RPS25B) | c...    70   3e-13
AT4G39200.2 | Symbols:  | 40S ribosomal protein S25 (RPS25E) | c...    69   5e-13
AT4G39200.1 | Symbols:  | 40S ribosomal protein S25 (RPS25E) | c...    69   5e-13
AT4G34555.1 | Symbols:  | 40S ribosomal protein S25, putative | ...    67   2e-12
AT2G16360.1 | Symbols:  | 40S ribosomal protein S25 (RPS25A) | c...    61   2e-10

>AT2G21580.2 | Symbols:  | 40S ribosomal protein S25 (RPS25B) |
           chr2:9236629-9237510 FORWARD
          Length = 107

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAI++LMA+G IRM+SAH+SQQIYTRATNT
Sbjct: 70  RINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107


>AT2G21580.1 | Symbols:  | 40S ribosomal protein S25 (RPS25B) |
           chr2:9236629-9237510 FORWARD
          Length = 108

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAI++LMA+G IRM+SAH+SQQIYTRATNT
Sbjct: 71  RINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108


>AT4G39200.2 | Symbols:  | 40S ribosomal protein S25 (RPS25E) |
           chr4:18257464-18258464 FORWARD
          Length = 107

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAI++LMA+G IRM++AH+SQQIYTRATNT
Sbjct: 70  RINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107


>AT4G39200.1 | Symbols:  | 40S ribosomal protein S25 (RPS25E) |
           chr4:18257464-18258464 FORWARD
          Length = 108

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAI++LMA+G IRM++AH+SQQIYTRATNT
Sbjct: 71  RINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108


>AT4G34555.1 | Symbols:  | 40S ribosomal protein S25, putative |
           chr4:16504381-16505339 REVERSE
          Length = 108

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 37/37 (100%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 42
           RINGSLARRAI++LMA+G+IRM+SAH+SQQIYTRAT+
Sbjct: 71  RINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107


>AT2G16360.1 | Symbols:  | 40S ribosomal protein S25 (RPS25A) |
           chr2:7076713-7077366 REVERSE
          Length = 125

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 33/36 (91%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 41
           RINGSLAR+AI+DLM +G+IRM+S H+SQQI TRAT
Sbjct: 87  RINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 122