Jatropha Genome Database

JcCA0309311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309311.20 - phase: 0 
         (115 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46580.1 | Symbols: MBD05, MBD5, ATMBD5 | MBD5 (METHYL-CPG-BI...    77   3e-15
AT5G59380.1 | Symbols: MBD6, ATMBD6 | MBD6; DNA binding / DNA de...    75   8e-15

>AT3G46580.1 | Symbols: MBD05, MBD5, ATMBD5 | MBD5
           (METHYL-CPG-BINDING DOMAIN PROTEIN 5); DNA binding /
           methyl-CpG binding | chr3:17148397-17149328 FORWARD
          Length = 182

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 4   YYIEPTTGRKFRSKREVQYYLETGTLKKRK-KGAESSEADVNPPENSGSQXXXXXXXXXX 62
           +Y EP TGRKFRSK EV YYLE GT KK+  K AE+ ++     E  GS           
Sbjct: 58  FYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKV 117

Query: 63  G----SIMKFDYLNVPDKIEWALTVANEDAWTPFTGGSKVPEYERQSWE 107
                  + FD+LNVP+K+ W     +E+AW PF G  K+ E   Q W+
Sbjct: 118 TEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWD 166


>AT5G59380.1 | Symbols: MBD6, ATMBD6 | MBD6; DNA binding / DNA
           demethylase/ methyl-CpG binding | chr5:23952321-23953485
           FORWARD
          Length = 225

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 4   YYIEPTTGRKFRSKREVQYYLETGTLKKRKKGAESSEADVNPPENSGSQXXXXXXX--XX 61
           YY EP TGRKFRS+ EV YYLE GT K+  K AE++  + +  E  GS            
Sbjct: 104 YYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPP 163

Query: 62  XGSIMKFDYLNVPDKIEWALTVANEDAWTPFTGGSKVPEYERQSW 106
               + FD+ N PDK+ W++  A E+ W P  G  KV +  R+ W
Sbjct: 164 PPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDW 208