Jatropha Genome Database

JcCA0309311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309311.10 - phase: 0 /partial
         (88 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...    92   5e-20
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    61   1e-10

>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
          ISOMERASE); triose-phosphate isomerase |
          chr3:20553794-20556078 FORWARD
          Length = 254

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 48/79 (60%)

Query: 1  MGRKFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDF 60
          M RKFFVGGNWKCNGT EEVKKIV TLNEA                          R DF
Sbjct: 1  MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query: 61 QVAAQNCWVRKGGAFTGEV 79
           VAAQNCWV+KGGAFTGEV
Sbjct: 61 FVAAQNCWVKKGGAFTGEV 79


>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 4   KFFVGGNWKCNGTTEEVKKIVTTLNEAXXXXXXXXXXXXXXXXXXXXXXXXXXRPDFQVA 63
           KFFVGGNWKCNGT + + K+++ LN A                          R D  ++
Sbjct: 65  KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRID--IS 122

Query: 64  AQNCWVRKGGAFTGEV 79
            QN WV KGGAFTGE+
Sbjct: 123 GQNSWVGKGGAFTGEI 138