Jatropha Genome Database

JcCA0309221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.20 + phase: 0 /partial
         (178 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54820.1 | Symbols:  | protein kinase family protein | chr1:2...    58   4e-09

>AT1G54820.1 | Symbols:  | protein kinase family protein |
           chr1:20447370-20450761 FORWARD
          Length = 458

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 94  AHSTITFTSSPD-VKGGCLYGSN---LSQKPPR-------KYKGVQVFTYKELEVATERF 142
           A +  ++TSSPD +K  CLY  N     Q PP+       + +GV+V+TYKELE+AT  F
Sbjct: 88  ASTNYSYTSSPDDIKRDCLYSRNPTSFRQLPPQTKSCRRSRAEGVEVYTYKELEIATNNF 147

Query: 143 SEAXXXXXXXXXXXXXXXLADGTVAAVKML 172
           SE                L+DGTVAA+K L
Sbjct: 148 SEE---KKIGNGDVYKGVLSDGTVAAIKKL 174